Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24733 | 5' | -50.4 | NC_005264.1 | + | 6894 | 0.66 | 0.994601 |
Target: 5'- cGAGCCGcgcagucccAGCGCGCGGcuuUC-CGUgggCGCGa -3' miRNA: 3'- -UUCGGU---------UUGUGCGCU---AGuGCAa--GUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 60249 | 0.66 | 0.994601 |
Target: 5'- -cGCCAugUAUGCGGUCACGcgaGCu -3' miRNA: 3'- uuCGGUuuGUGCGCUAGUGCaagUGc -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 77989 | 0.66 | 0.994601 |
Target: 5'- cGAGauaCGAAgGcCGCGAUCGCGggcgaUCACGu -3' miRNA: 3'- -UUCg--GUUUgU-GCGCUAGUGCa----AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 49759 | 0.66 | 0.994601 |
Target: 5'- gGAGUCAGACaccacuACGCGAggCAUGUccgucUCGCGu -3' miRNA: 3'- -UUCGGUUUG------UGCGCUa-GUGCA-----AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 40960 | 0.66 | 0.994601 |
Target: 5'- cAGCCGcAGCGgGCGAcggCGCGagCGCGa -3' miRNA: 3'- uUCGGU-UUGUgCGCUa--GUGCaaGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 72025 | 0.66 | 0.995368 |
Target: 5'- cGGCCGccACACGCGAg-ACGUgcugaccuccaUCGCGg -3' miRNA: 3'- uUCGGUu-UGUGCGCUagUGCA-----------AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 84923 | 0.66 | 0.995649 |
Target: 5'- aGAGCCAGGCGCGgGAcaaagcguauuuaACGUcCACGc -3' miRNA: 3'- -UUCGGUUUGUGCgCUag-----------UGCAaGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 151847 | 0.66 | 0.99598 |
Target: 5'- gGGGCCGccgcuccggcggcGACACGUGGgggGCGUcuUCGCGg -3' miRNA: 3'- -UUCGGU-------------UUGUGCGCUag-UGCA--AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 91368 | 0.66 | 0.996044 |
Target: 5'- cAGUCaAAACGCGCGAgagguugugCACGUUagGCGa -3' miRNA: 3'- uUCGG-UUUGUGCGCUa--------GUGCAAg-UGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 3290 | 0.66 | 0.996637 |
Target: 5'- -cGCCAGAguCGUGAgcucgCGCGggaUCGCGc -3' miRNA: 3'- uuCGGUUUguGCGCUa----GUGCa--AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 33627 | 0.66 | 0.996637 |
Target: 5'- cGGCCAGAUugGCGGcgACGguuggUCgACGg -3' miRNA: 3'- uUCGGUUUGugCGCUagUGCa----AG-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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