miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 114692 0.66 0.993734
Target:  5'- -cGCCGAGCaggauuGCGCGGUCuCGUgCGCc -3'
miRNA:   3'- uuCGGUUUG------UGCGCUAGuGCAaGUGc -5'
24733 5' -50.4 NC_005264.1 + 112627 0.67 0.987592
Target:  5'- -cGCCGGuCACGCaacgcaGA-CGCGUUCGCGu -3'
miRNA:   3'- uuCGGUUuGUGCG------CUaGUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 109587 0.83 0.3769
Target:  5'- cAAGCCAGACACGCGccCGCGgggCACGg -3'
miRNA:   3'- -UUCGGUUUGUGCGCuaGUGCaa-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 104210 0.67 0.992759
Target:  5'- -cGCCGcagAGCACGCGucgCACGggUCAuCGg -3'
miRNA:   3'- uuCGGU---UUGUGCGCua-GUGCa-AGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 100096 0.67 0.990447
Target:  5'- cGGCCGcggggcucagcGACgACGCGGUUGCGggaaucgUCGCGg -3'
miRNA:   3'- uUCGGU-----------UUG-UGCGCUAGUGCa------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 98994 0.69 0.972255
Target:  5'- -uGCCGGGCauuaACGCGuUUACGUUCuACGa -3'
miRNA:   3'- uuCGGUUUG----UGCGCuAGUGCAAG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 97553 0.7 0.946015
Target:  5'- aGAGCCAGACAUGCugcugcugcauacGAcCACGUUCGg- -3'
miRNA:   3'- -UUCGGUUUGUGCG-------------CUaGUGCAAGUgc -5'
24733 5' -50.4 NC_005264.1 + 93972 0.67 0.989092
Target:  5'- gGAGCUGAACGCGC-----CGUUCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCGcuaguGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 93242 0.67 0.989092
Target:  5'- -cGCCGGGCgGCGCccucgucggCGCGUUCGCGc -3'
miRNA:   3'- uuCGGUUUG-UGCGcua------GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 91368 0.66 0.996044
Target:  5'- cAGUCaAAACGCGCGAgagguugugCACGUUagGCGa -3'
miRNA:   3'- uUCGG-UUUGUGCGCUa--------GUGCAAg-UGC- -5'
24733 5' -50.4 NC_005264.1 + 90833 0.68 0.982128
Target:  5'- cGGCCGcGCACGuCGAgcaagaaacagcUCGCGUaggaUCGCGa -3'
miRNA:   3'- uUCGGUuUGUGC-GCU------------AGUGCA----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 88242 0.66 0.993734
Target:  5'- gGGGUCAGGCGCGgGGUCAuCGUagaucguaggCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUAGU-GCAa---------GUGC- -5'
24733 5' -50.4 NC_005264.1 + 87578 0.7 0.940361
Target:  5'- -cGCCGAcgaggacgaacacgGCGCGUGGUCGCGUUaUACa -3'
miRNA:   3'- uuCGGUU--------------UGUGCGCUAGUGCAA-GUGc -5'
24733 5' -50.4 NC_005264.1 + 86594 0.7 0.95895
Target:  5'- -cGUgAGACACGCGGucgUCGCGccUCGCGa -3'
miRNA:   3'- uuCGgUUUGUGCGCU---AGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 84923 0.66 0.995649
Target:  5'- aGAGCCAGGCGCGgGAcaaagcguauuuaACGUcCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUag-----------UGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77989 0.66 0.994601
Target:  5'- cGAGauaCGAAgGcCGCGAUCGCGggcgaUCACGu -3'
miRNA:   3'- -UUCg--GUUUgU-GCGCUAGUGCa----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77442 0.67 0.987434
Target:  5'- gAAGCUAAAggagaacCGCGUGGUCGCGguaCACa -3'
miRNA:   3'- -UUCGGUUU-------GUGCGCUAGUGCaa-GUGc -5'
24733 5' -50.4 NC_005264.1 + 77261 0.67 0.991666
Target:  5'- -uGCCcAGCACGUGGUgCACGgugcCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCUA-GUGCaa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 76242 0.67 0.991666
Target:  5'- -cGCgAGGCGCGaCGAcCGCGUgucUCACGc -3'
miRNA:   3'- uuCGgUUUGUGC-GCUaGUGCA---AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 74510 0.67 0.991666
Target:  5'- cGGCCAGGCugaucgacaucgACGCGAuacaaagcuucgUCAgGUUCACc -3'
miRNA:   3'- uUCGGUUUG------------UGCGCU------------AGUgCAAGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.