miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 86594 0.7 0.95895
Target:  5'- -cGUgAGACACGCGGucgUCGCGccUCGCGa -3'
miRNA:   3'- uuCGgUUUGUGCGCU---AGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 114692 0.66 0.993734
Target:  5'- -cGCCGAGCaggauuGCGCGGUCuCGUgCGCc -3'
miRNA:   3'- uuCGGUUUG------UGCGCUAGuGCAaGUGc -5'
24733 5' -50.4 NC_005264.1 + 153364 0.66 0.993734
Target:  5'- cGGCagacaAGACGCGCGAa-GCGUUgCGCGa -3'
miRNA:   3'- uUCGg----UUUGUGCGCUagUGCAA-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 119211 0.66 0.993734
Target:  5'- cGAGCguAACGCGCGAcCACGcgaggUUugGc -3'
miRNA:   3'- -UUCGguUUGUGCGCUaGUGCa----AGugC- -5'
24733 5' -50.4 NC_005264.1 + 136150 0.69 0.972255
Target:  5'- --aCCAGACugGCGAguuaGCGUUCAaCGc -3'
miRNA:   3'- uucGGUUUGugCGCUag--UGCAAGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 49759 0.66 0.994601
Target:  5'- gGAGUCAGACaccacuACGCGAggCAUGUccgucUCGCGu -3'
miRNA:   3'- -UUCGGUUUG------UGCGCUa-GUGCA-----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 133958 0.7 0.95895
Target:  5'- uGGCCGGGgucuuCGCGGUgGCGUUCGCc -3'
miRNA:   3'- uUCGGUUUgu---GCGCUAgUGCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 47861 0.67 0.991666
Target:  5'- -cGCC-GGCACGCGccUCAaGUUCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCu-AGUgCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77261 0.67 0.991666
Target:  5'- -uGCCcAGCACGUGGUgCACGgugcCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCUA-GUGCaa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 56133 0.68 0.97759
Target:  5'- --aCUAGGCGCGCGAgugUCGCGUUgGCc -3'
miRNA:   3'- uucGGUUUGUGCGCU---AGUGCAAgUGc -5'
24733 5' -50.4 NC_005264.1 + 9817 0.68 0.97759
Target:  5'- cGGCCGGcuACAUGgGccgccgCACGUUCGCGa -3'
miRNA:   3'- uUCGGUU--UGUGCgCua----GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 90833 0.68 0.982128
Target:  5'- cGGCCGcGCACGuCGAgcaagaaacagcUCGCGUaggaUCGCGa -3'
miRNA:   3'- uUCGGUuUGUGC-GCU------------AGUGCA----AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 147287 0.68 0.984119
Target:  5'- gGAGCCAcAACACGUacacGGUCAUGaUCAUa -3'
miRNA:   3'- -UUCGGU-UUGUGCG----CUAGUGCaAGUGc -5'
24733 5' -50.4 NC_005264.1 + 31703 0.67 0.987592
Target:  5'- -cGCCAAaggucGCGCGCGGggcgUACuuGUUCGCGu -3'
miRNA:   3'- uuCGGUU-----UGUGCGCUa---GUG--CAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 93242 0.67 0.989092
Target:  5'- -cGCCGGGCgGCGCccucgucggCGCGUUCGCGc -3'
miRNA:   3'- uuCGGUUUG-UGCGcua------GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 93972 0.67 0.989092
Target:  5'- gGAGCUGAACGCGC-----CGUUCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCGcuaguGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 6144 0.69 0.975026
Target:  5'- aGGGCCGcGCGCccgucGCGcAUCGCGUgCACGa -3'
miRNA:   3'- -UUCGGUuUGUG-----CGC-UAGUGCAaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 152237 0.69 0.975026
Target:  5'- -uGCCucGCGCGauaugGAUCGCGgUCGCGg -3'
miRNA:   3'- uuCGGuuUGUGCg----CUAGUGCaAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 100096 0.67 0.990447
Target:  5'- cGGCCGcggggcucagcGACgACGCGGUUGCGggaaucgUCGCGg -3'
miRNA:   3'- uUCGGU-----------UUG-UGCGCUAGUGCa------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 43590 0.67 0.991666
Target:  5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3'
miRNA:   3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.