miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 88242 0.66 0.993734
Target:  5'- gGGGUCAGGCGCGgGGUCAuCGUagaucguaggCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCgCUAGU-GCAa---------GUGC- -5'
24733 5' -50.4 NC_005264.1 + 104210 0.67 0.992759
Target:  5'- -cGCCGcagAGCACGCGucgCACGggUCAuCGg -3'
miRNA:   3'- uuCGGU---UUGUGCGCua-GUGCa-AGU-GC- -5'
24733 5' -50.4 NC_005264.1 + 64413 0.67 0.992759
Target:  5'- aAGGCCGAcgccgcggGCACgGCGAUgACGUcugcCGCGg -3'
miRNA:   3'- -UUCGGUU--------UGUG-CGCUAgUGCAa---GUGC- -5'
24733 5' -50.4 NC_005264.1 + 7139 0.67 0.992759
Target:  5'- uGAGCCGAcgaaACGUGGUCGCGgcCAgGu -3'
miRNA:   3'- -UUCGGUUug--UGCGCUAGUGCaaGUgC- -5'
24733 5' -50.4 NC_005264.1 + 24294 0.67 0.992759
Target:  5'- -cGCC--GCACGCGGUUACaucCACGg -3'
miRNA:   3'- uuCGGuuUGUGCGCUAGUGcaaGUGC- -5'
24733 5' -50.4 NC_005264.1 + 126166 0.67 0.992759
Target:  5'- uGAGCCGAcgaaACGUGGUCGCGgcCAgGu -3'
miRNA:   3'- -UUCGGUUug--UGCGCUAGUGCaaGUgC- -5'
24733 5' -50.4 NC_005264.1 + 76242 0.67 0.991666
Target:  5'- -cGCgAGGCGCGaCGAcCGCGUgucUCACGc -3'
miRNA:   3'- uuCGgUUUGUGC-GCUaGUGCA---AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 74510 0.67 0.991666
Target:  5'- cGGCCAGGCugaucgacaucgACGCGAuacaaagcuucgUCAgGUUCACc -3'
miRNA:   3'- uUCGGUUUG------------UGCGCU------------AGUgCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 21746 0.67 0.991666
Target:  5'- uGGCCAAGaAgGCGAUCAUGcagCACa -3'
miRNA:   3'- uUCGGUUUgUgCGCUAGUGCaa-GUGc -5'
24733 5' -50.4 NC_005264.1 + 43590 0.67 0.991666
Target:  5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3'
miRNA:   3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 162617 0.67 0.991666
Target:  5'- -cGCCAGGCACggaaaGCGAUCGgGggCuACGa -3'
miRNA:   3'- uuCGGUUUGUG-----CGCUAGUgCaaG-UGC- -5'
24733 5' -50.4 NC_005264.1 + 47861 0.67 0.991666
Target:  5'- -cGCC-GGCACGCGccUCAaGUUCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCu-AGUgCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 77261 0.67 0.991666
Target:  5'- -uGCCcAGCACGUGGUgCACGgugcCGCGc -3'
miRNA:   3'- uuCGGuUUGUGCGCUA-GUGCaa--GUGC- -5'
24733 5' -50.4 NC_005264.1 + 100096 0.67 0.990447
Target:  5'- cGGCCGcggggcucagcGACgACGCGGUUGCGggaaucgUCGCGg -3'
miRNA:   3'- uUCGGU-----------UUG-UGCGCUAGUGCa------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 93972 0.67 0.989092
Target:  5'- gGAGCUGAACGCGC-----CGUUCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCGcuaguGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 93242 0.67 0.989092
Target:  5'- -cGCCGGGCgGCGCccucgucggCGCGUUCGCGc -3'
miRNA:   3'- uuCGGUUUG-UGCGcua------GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 117611 0.67 0.989092
Target:  5'- cGGCCAugccuACGCuGCGcUCGgCGUUCAUGg -3'
miRNA:   3'- uUCGGUu----UGUG-CGCuAGU-GCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 58872 0.67 0.989092
Target:  5'- cGGCCGuaggguGCGCaGCGccaCGCGUUCGCGc -3'
miRNA:   3'- uUCGGUu-----UGUG-CGCua-GUGCAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 31703 0.67 0.987592
Target:  5'- -cGCCAAaggucGCGCGCGGggcgUACuuGUUCGCGu -3'
miRNA:   3'- uuCGGUU-----UGUGCGCUa---GUG--CAAGUGC- -5'
24733 5' -50.4 NC_005264.1 + 112627 0.67 0.987592
Target:  5'- -cGCCGGuCACGCaacgcaGA-CGCGUUCGCGu -3'
miRNA:   3'- uuCGGUUuGUGCG------CUaGUGCAAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.