miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 18106 0.68 0.939064
Target:  5'- cGGCAGAugGCGCGAgaggcuaagagacgUGCuugcUGUCUgGCGc -3'
miRNA:   3'- aCCGUCU--CGCGCU--------------AUGu---AUAGAgCGC- -5'
24734 3' -52.6 NC_005264.1 + 122656 0.68 0.935609
Target:  5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3'
miRNA:   3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 62685 0.69 0.927251
Target:  5'- cGGCGucAGCGCGAagaacgcgugcuaccUGCGUAUCggcCGCGa -3'
miRNA:   3'- aCCGUc-UCGCGCU---------------AUGUAUAGa--GCGC- -5'
24734 3' -52.6 NC_005264.1 + 89956 0.69 0.913514
Target:  5'- cGGCGGccgcuGGCGCGuagaACuguUGUCUUGCGg -3'
miRNA:   3'- aCCGUC-----UCGCGCua--UGu--AUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 20251 0.69 0.913514
Target:  5'- gGGCAGGGguUGCGGcGCGgc-CUCGCGg -3'
miRNA:   3'- aCCGUCUC--GCGCUaUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 99542 0.69 0.907369
Target:  5'- gGGgAGAGCGaCGAggacGCGUuuUCUUGCGg -3'
miRNA:   3'- aCCgUCUCGC-GCUa---UGUAu-AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 128936 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 117848 0.69 0.900977
Target:  5'- cGGCGGAGUGCGcAUGCAaggcaUgGCGg -3'
miRNA:   3'- aCCGUCUCGCGC-UAUGUauag-AgCGC- -5'
24734 3' -52.6 NC_005264.1 + 153364 0.69 0.93046
Target:  5'- cGGCAGAcaagacGCGCGAaGCGUug--CGCGa -3'
miRNA:   3'- aCCGUCU------CGCGCUaUGUAuagaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 99028 0.69 0.913514
Target:  5'- cUGGUcGAGCGCGcgGCAgaaaUCGUGg -3'
miRNA:   3'- -ACCGuCUCGCGCuaUGUauagAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 126882 0.69 0.911086
Target:  5'- aGGCGaaucgccaucgucGGCGCGAaACAgGUCUCGCGc -3'
miRNA:   3'- aCCGUc------------UCGCGCUaUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 116421 0.69 0.907369
Target:  5'- aGcGCAGGGCgGCG-UGCAgc-CUCGCGg -3'
miRNA:   3'- aC-CGUCUCG-CGCuAUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 66698 0.69 0.925061
Target:  5'- gGGCGGGGgGCGuacUACGUGUCgcCGgGg -3'
miRNA:   3'- aCCGUCUCgCGCu--AUGUAUAGa-GCgC- -5'
24734 3' -52.6 NC_005264.1 + 9910 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 150209 0.69 0.900977
Target:  5'- uUGGCGGccuCGCGGUAUA-GUCUUGCGc -3'
miRNA:   3'- -ACCGUCuc-GCGCUAUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 19029 0.7 0.873016
Target:  5'- gGGCGGAGCGCaggcgguuccaGGUGCAUAaauaCcCGCGg -3'
miRNA:   3'- aCCGUCUCGCG-----------CUAUGUAUa---GaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 129862 0.7 0.880357
Target:  5'- aGGCGGAGCGCGAaaaucgGCAcGUCUUu-- -3'
miRNA:   3'- aCCGUCUCGCGCUa-----UGUaUAGAGcgc -5'
24734 3' -52.6 NC_005264.1 + 20537 0.7 0.887467
Target:  5'- cGGCGGgcacgaagaAGCGCGAgAUAUGUaUCGCGc -3'
miRNA:   3'- aCCGUC---------UCGCGCUaUGUAUAgAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 63934 0.7 0.873016
Target:  5'- cGGCGGGGUGCucgcUAgAUAUCUCGUc -3'
miRNA:   3'- aCCGUCUCGCGcu--AUgUAUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 25713 0.7 0.873016
Target:  5'- uUGGCGcGGGCggcaGCGGUGCGUAcUCggUCGCGg -3'
miRNA:   3'- -ACCGU-CUCG----CGCUAUGUAU-AG--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.