miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 9910 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 126882 0.69 0.911086
Target:  5'- aGGCGaaucgccaucgucGGCGCGAaACAgGUCUCGCGc -3'
miRNA:   3'- aCCGUc------------UCGCGCUaUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 62685 0.69 0.927251
Target:  5'- cGGCGucAGCGCGAagaacgcgugcuaccUGCGUAUCggcCGCGa -3'
miRNA:   3'- aCCGUc-UCGCGCU---------------AUGUAUAGa--GCGC- -5'
24734 3' -52.6 NC_005264.1 + 89956 0.69 0.913514
Target:  5'- cGGCGGccgcuGGCGCGuagaACuguUGUCUUGCGg -3'
miRNA:   3'- aCCGUC-----UCGCGCua--UGu--AUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 99542 0.69 0.907369
Target:  5'- gGGgAGAGCGaCGAggacGCGUuuUCUUGCGg -3'
miRNA:   3'- aCCgUCUCGC-GCUa---UGUAu-AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 128936 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 20251 0.69 0.913514
Target:  5'- gGGCAGGGguUGCGGcGCGgc-CUCGCGg -3'
miRNA:   3'- aCCGUCUC--GCGCUaUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 117848 0.69 0.900977
Target:  5'- cGGCGGAGUGCGcAUGCAaggcaUgGCGg -3'
miRNA:   3'- aCCGUCUCGCGC-UAUGUauag-AgCGC- -5'
24734 3' -52.6 NC_005264.1 + 150209 0.69 0.900977
Target:  5'- uUGGCGGccuCGCGGUAUA-GUCUUGCGc -3'
miRNA:   3'- -ACCGUCuc-GCGCUAUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 153364 0.69 0.93046
Target:  5'- cGGCAGAcaagacGCGCGAaGCGUug--CGCGa -3'
miRNA:   3'- aCCGUCU------CGCGCUaUGUAuagaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 66698 0.69 0.925061
Target:  5'- gGGCGGGGgGCGuacUACGUGUCgcCGgGg -3'
miRNA:   3'- aCCGUCUCgCGCu--AUGUAUAGa-GCgC- -5'
24734 3' -52.6 NC_005264.1 + 99028 0.69 0.913514
Target:  5'- cUGGUcGAGCGCGcgGCAgaaaUCGUGg -3'
miRNA:   3'- -ACCGuCUCGCGCuaUGUauagAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 116421 0.69 0.907369
Target:  5'- aGcGCAGGGCgGCG-UGCAgc-CUCGCGg -3'
miRNA:   3'- aC-CGUCUCG-CGCuAUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 36100 0.68 0.953733
Target:  5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3'
miRNA:   3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 113512 0.68 0.945161
Target:  5'- gGGCcGAGCGCGA-ACAg--C-CGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUaUGUauaGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 3629 0.68 0.935609
Target:  5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3'
miRNA:   3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 59024 0.68 0.953733
Target:  5'- aGGCAG-GCGCGu--CAggucgGUCUcCGCGc -3'
miRNA:   3'- aCCGUCuCGCGCuauGUa----UAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 129391 0.68 0.947834
Target:  5'- gUGGCGGgaauuaauagucAGCGCGGggguuuauUCUCGCGg -3'
miRNA:   3'- -ACCGUC------------UCGCGCUauguau--AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 22895 0.68 0.949568
Target:  5'- gGGCAGGGCcCGAggguCucuUCUCGCa -3'
miRNA:   3'- aCCGUCUCGcGCUau--GuauAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 43394 0.68 0.953733
Target:  5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3'
miRNA:   3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.