Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24734 | 3' | -52.6 | NC_005264.1 | + | 155127 | 0.68 | 0.953733 |
Target: 5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3' miRNA: 3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 36100 | 0.68 | 0.953733 |
Target: 5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3' miRNA: 3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 59024 | 0.68 | 0.953733 |
Target: 5'- aGGCAG-GCGCGu--CAggucgGUCUcCGCGc -3' miRNA: 3'- aCCGUCuCGCGCuauGUa----UAGA-GCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 43394 | 0.68 | 0.953733 |
Target: 5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3' miRNA: 3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 58500 | 0.67 | 0.957659 |
Target: 5'- cGcGCaAGAGCGCGGUGCGUc-CUCGg- -3' miRNA: 3'- aC-CG-UCUCGCGCUAUGUAuaGAGCgc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 16655 | 0.67 | 0.961708 |
Target: 5'- gGuGCGGAGCGCGAgggauugcagagaugACGUGUUUC-CGu -3' miRNA: 3'- aC-CGUCUCGCGCUa--------------UGUAUAGAGcGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 138497 | 0.67 | 0.964814 |
Target: 5'- cGGCGGuugccGCGCGAUuuca--CUCGCGa -3' miRNA: 3'- aCCGUCu----CGCGCUAuguauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 71553 | 0.67 | 0.968054 |
Target: 5'- cUGGCGGAGCuCG-UGCAcAUC-CGCa -3' miRNA: 3'- -ACCGUCUCGcGCuAUGUaUAGaGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 121859 | 0.67 | 0.968054 |
Target: 5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3' miRNA: 3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 2833 | 0.67 | 0.968054 |
Target: 5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3' miRNA: 3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 46722 | 0.67 | 0.971076 |
Target: 5'- cGGCAGAgGCGCagcGCuAUGUCUgGCa -3' miRNA: 3'- aCCGUCU-CGCGcuaUG-UAUAGAgCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 138602 | 0.67 | 0.971076 |
Target: 5'- cGGCAGcGGUGgGGUGCAaGUCaUCGUc -3' miRNA: 3'- aCCGUC-UCGCgCUAUGUaUAG-AGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 133047 | 0.66 | 0.973065 |
Target: 5'- cGGCGGuGCGCGuguuucuggCUCGCa -3' miRNA: 3'- aCCGUCuCGCGCuauguaua-GAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 58018 | 0.66 | 0.973887 |
Target: 5'- cGGCGGAcaggccgucGUGCGGcGCccgcucGUCUCGCGa -3' miRNA: 3'- aCCGUCU---------CGCGCUaUGua----UAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 37562 | 0.66 | 0.976494 |
Target: 5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3' miRNA: 3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 115731 | 0.66 | 0.976494 |
Target: 5'- aUGGUAGGGgGCGcgGCGagcgcUAuacUCUCGCc -3' miRNA: 3'- -ACCGUCUCgCGCuaUGU-----AU---AGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 79421 | 0.66 | 0.976494 |
Target: 5'- cGGCGGAacccagcguGgGCGGUGCGggGUCUC-CGg -3' miRNA: 3'- aCCGUCU---------CgCGCUAUGUa-UAGAGcGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 73319 | 0.66 | 0.976494 |
Target: 5'- aGGCAGAGCGCcguGAUAUAcugga-GCGg -3' miRNA: 3'- aCCGUCUCGCG---CUAUGUauagagCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 71326 | 0.66 | 0.976494 |
Target: 5'- uUGGC-GAGUGCGcgGCAU-UCUaCGCc -3' miRNA: 3'- -ACCGuCUCGCGCuaUGUAuAGA-GCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 125925 | 0.66 | 0.976494 |
Target: 5'- cUGGagcCAGAGCagGCGAcgaggaauuaaUACcUGUCUCGCGc -3' miRNA: 3'- -ACC---GUCUCG--CGCU-----------AUGuAUAGAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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