miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 87064 0.66 0.98134
Target:  5'- aGGC-GAGCGCGAacgagaaccagccacACAgc-CUCGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUa--------------UGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 89956 0.69 0.913514
Target:  5'- cGGCGGccgcuGGCGCGuagaACuguUGUCUUGCGg -3'
miRNA:   3'- aCCGUC-----UCGCGCua--UGu--AUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 93699 0.72 0.778913
Target:  5'- gUGGCAGuAGCGCGGgccACAgAUCagGCGg -3'
miRNA:   3'- -ACCGUC-UCGCGCUa--UGUaUAGagCGC- -5'
24734 3' -52.6 NC_005264.1 + 99028 0.69 0.913514
Target:  5'- cUGGUcGAGCGCGcgGCAgaaaUCGUGg -3'
miRNA:   3'- -ACCGuCUCGCGCuaUGUauagAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 99542 0.69 0.907369
Target:  5'- gGGgAGAGCGaCGAggacGCGUuuUCUUGCGg -3'
miRNA:   3'- aCCgUCUCGC-GCUa---UGUAu-AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 106529 0.71 0.841458
Target:  5'- cGGCGGcAGCGCGGccGCGgaguuUUUCGCGa -3'
miRNA:   3'- aCCGUC-UCGCGCUa-UGUau---AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 107060 0.66 0.983171
Target:  5'- -cGCGGAGCGUGGUuaaGCAgacUCagCGCGa -3'
miRNA:   3'- acCGUCUCGCGCUA---UGUau-AGa-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 107890 0.76 0.574458
Target:  5'- aUGGCAGcuagcGGCGCGGUGCGUAUg-CGCu -3'
miRNA:   3'- -ACCGUC-----UCGCGCUAUGUAUAgaGCGc -5'
24734 3' -52.6 NC_005264.1 + 109630 0.72 0.778913
Target:  5'- gGGCggGGGGCGCGAcgguUGCAa--CUCGCGg -3'
miRNA:   3'- aCCG--UCUCGCGCU----AUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 113512 0.68 0.945161
Target:  5'- gGGCcGAGCGCGA-ACAg--C-CGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUaUGUauaGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 115731 0.66 0.976494
Target:  5'- aUGGUAGGGgGCGcgGCGagcgcUAuacUCUCGCc -3'
miRNA:   3'- -ACCGUCUCgCGCuaUGU-----AU---AGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 116421 0.69 0.907369
Target:  5'- aGcGCAGGGCgGCG-UGCAgc-CUCGCGg -3'
miRNA:   3'- aC-CGUCUCG-CGCuAUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 117007 0.66 0.978905
Target:  5'- gGGCGGucuGCGCGGcGCAUGaCgaguacagCGCGa -3'
miRNA:   3'- aCCGUCu--CGCGCUaUGUAUaGa-------GCGC- -5'
24734 3' -52.6 NC_005264.1 + 117848 0.69 0.900977
Target:  5'- cGGCGGAGUGCGcAUGCAaggcaUgGCGg -3'
miRNA:   3'- aCCGUCUCGCGC-UAUGUauag-AgCGC- -5'
24734 3' -52.6 NC_005264.1 + 121859 0.67 0.968054
Target:  5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3'
miRNA:   3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 122656 0.68 0.935609
Target:  5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3'
miRNA:   3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 124429 0.66 0.981128
Target:  5'- -cGCAGAGCGCG-UGC---UC-CGCGg -3'
miRNA:   3'- acCGUCUCGCGCuAUGuauAGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 125925 0.66 0.976494
Target:  5'- cUGGagcCAGAGCagGCGAcgaggaauuaaUACcUGUCUCGCGc -3'
miRNA:   3'- -ACC---GUCUCG--CGCU-----------AUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 126882 0.69 0.911086
Target:  5'- aGGCGaaucgccaucgucGGCGCGAaACAgGUCUCGCGc -3'
miRNA:   3'- aCCGUc------------UCGCGCUaUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 128936 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.