miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 129391 0.68 0.947834
Target:  5'- gUGGCGGgaauuaauagucAGCGCGGggguuuauUCUCGCGg -3'
miRNA:   3'- -ACCGUC------------UCGCGCUauguau--AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 129860 0.71 0.849664
Target:  5'- aUGGCGauauGCGCGAgcccGCGUGUCUcCGCa -3'
miRNA:   3'- -ACCGUcu--CGCGCUa---UGUAUAGA-GCGc -5'
24734 3' -52.6 NC_005264.1 + 129862 0.7 0.880357
Target:  5'- aGGCGGAGCGCGAaaaucgGCAcGUCUUu-- -3'
miRNA:   3'- aCCGUCUCGCGCUa-----UGUaUAGAGcgc -5'
24734 3' -52.6 NC_005264.1 + 133047 0.66 0.973065
Target:  5'- cGGCGGuGCGCGuguuucuggCUCGCa -3'
miRNA:   3'- aCCGUCuCGCGCuauguaua-GAGCGc -5'
24734 3' -52.6 NC_005264.1 + 138497 0.67 0.964814
Target:  5'- cGGCGGuugccGCGCGAUuuca--CUCGCGa -3'
miRNA:   3'- aCCGUCu----CGCGCUAuguauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 138602 0.67 0.971076
Target:  5'- cGGCAGcGGUGgGGUGCAaGUCaUCGUc -3'
miRNA:   3'- aCCGUC-UCGCgCUAUGUaUAG-AGCGc -5'
24734 3' -52.6 NC_005264.1 + 142284 1.08 0.00676
Target:  5'- cUGGCAGAGCGCGAUACAUAUCUCGCGc -3'
miRNA:   3'- -ACCGUCUCGCGCUAUGUAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 150209 0.69 0.900977
Target:  5'- uUGGCGGccuCGCGGUAUA-GUCUUGCGc -3'
miRNA:   3'- -ACCGUCuc-GCGCUAUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 153124 0.66 0.977482
Target:  5'- cGGCGGgcacaauggcucagcGGCGCGAaACAgcGUCgaggCGCGa -3'
miRNA:   3'- aCCGUC---------------UCGCGCUaUGUa-UAGa---GCGC- -5'
24734 3' -52.6 NC_005264.1 + 153364 0.69 0.93046
Target:  5'- cGGCAGAcaagacGCGCGAaGCGUug--CGCGa -3'
miRNA:   3'- aCCGUCU------CGCGCUaUGUAuagaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 155127 0.68 0.953733
Target:  5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3'
miRNA:   3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 155618 0.71 0.824458
Target:  5'- cGGCAuGAGaaagaagGCGAUcgcCGUGUCUCGCGu -3'
miRNA:   3'- aCCGU-CUCg------CGCUAu--GUAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 156589 0.66 0.976494
Target:  5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3'
miRNA:   3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 156631 0.66 0.983171
Target:  5'- cGGCGGGGgGUcaaaggACGcGUCUCGCa -3'
miRNA:   3'- aCCGUCUCgCGcua---UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 162421 0.68 0.953733
Target:  5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3'
miRNA:   3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.