Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24734 | 3' | -52.6 | NC_005264.1 | + | 71326 | 0.66 | 0.976494 |
Target: 5'- uUGGC-GAGUGCGcgGCAU-UCUaCGCc -3' miRNA: 3'- -ACCGuCUCGCGCuaUGUAuAGA-GCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 66698 | 0.69 | 0.925061 |
Target: 5'- gGGCGGGGgGCGuacUACGUGUCgcCGgGg -3' miRNA: 3'- aCCGUCUCgCGCu--AUGUAUAGa-GCgC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 63934 | 0.7 | 0.873016 |
Target: 5'- cGGCGGGGUGCucgcUAgAUAUCUCGUc -3' miRNA: 3'- aCCGUCUCGCGcu--AUgUAUAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 62685 | 0.69 | 0.927251 |
Target: 5'- cGGCGucAGCGCGAagaacgcgugcuaccUGCGUAUCggcCGCGa -3' miRNA: 3'- aCCGUc-UCGCGCU---------------AUGUAUAGa--GCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 59024 | 0.68 | 0.953733 |
Target: 5'- aGGCAG-GCGCGu--CAggucgGUCUcCGCGc -3' miRNA: 3'- aCCGUCuCGCGCuauGUa----UAGA-GCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 58500 | 0.67 | 0.957659 |
Target: 5'- cGcGCaAGAGCGCGGUGCGUc-CUCGg- -3' miRNA: 3'- aC-CG-UCUCGCGCUAUGUAuaGAGCgc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 58018 | 0.66 | 0.973887 |
Target: 5'- cGGCGGAcaggccgucGUGCGGcGCccgcucGUCUCGCGa -3' miRNA: 3'- aCCGUCU---------CGCGCUaUGua----UAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 50997 | 0.71 | 0.857663 |
Target: 5'- cGGCAGcGGUGCGGaAgAUA-CUCGCGg -3' miRNA: 3'- aCCGUC-UCGCGCUaUgUAUaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 46722 | 0.67 | 0.971076 |
Target: 5'- cGGCAGAgGCGCagcGCuAUGUCUgGCa -3' miRNA: 3'- aCCGUCU-CGCGcuaUG-UAUAGAgCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 44970 | 0.66 | 0.979816 |
Target: 5'- gUGGUAGAGCGgCGGUACGaagagggcgagcCUgGCGa -3' miRNA: 3'- -ACCGUCUCGC-GCUAUGUaua---------GAgCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 43394 | 0.68 | 0.953733 |
Target: 5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3' miRNA: 3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 37604 | 0.66 | 0.983171 |
Target: 5'- cGGCGGGGgGUcaaaggACGcGUCUCGCa -3' miRNA: 3'- aCCGUCUCgCGcua---UGUaUAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 37562 | 0.66 | 0.976494 |
Target: 5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3' miRNA: 3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 36591 | 0.71 | 0.824458 |
Target: 5'- cGGCAuGAGaaagaagGCGAUcgcCGUGUCUCGCGu -3' miRNA: 3'- aCCGU-CUCg------CGCUAu--GUAUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 36100 | 0.68 | 0.953733 |
Target: 5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3' miRNA: 3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 34097 | 0.66 | 0.977482 |
Target: 5'- cGGCGGgcacaauggcucagcGGCGCGAaACAgcGUCgaggCGCGa -3' miRNA: 3'- aCCGUC---------------UCGCGCUaUGUa-UAGa---GCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 29127 | 0.66 | 0.978905 |
Target: 5'- aGGCuguaccugaGGAGCGCGuggccGCAUAgCUUGCa -3' miRNA: 3'- aCCG---------UCUCGCGCua---UGUAUaGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 25713 | 0.7 | 0.873016 |
Target: 5'- uUGGCGcGGGCggcaGCGGUGCGUAcUCggUCGCGg -3' miRNA: 3'- -ACCGU-CUCG----CGCUAUGUAU-AG--AGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 22895 | 0.68 | 0.949568 |
Target: 5'- gGGCAGGGCcCGAggguCucuUCUCGCa -3' miRNA: 3'- aCCGUCUCGcGCUau--GuauAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 21123 | 0.72 | 0.806727 |
Target: 5'- aUGGaCGGAGCGCGAU-CGUAUUUCu-- -3' miRNA: 3'- -ACC-GUCUCGCGCUAuGUAUAGAGcgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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