Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24734 | 3' | -52.6 | NC_005264.1 | + | 87064 | 0.66 | 0.98134 |
Target: 5'- aGGC-GAGCGCGAacgagaaccagccacACAgc-CUCGCGg -3' miRNA: 3'- aCCGuCUCGCGCUa--------------UGUauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 115731 | 0.66 | 0.976494 |
Target: 5'- aUGGUAGGGgGCGcgGCGagcgcUAuacUCUCGCc -3' miRNA: 3'- -ACCGUCUCgCGCuaUGU-----AU---AGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 79421 | 0.66 | 0.976494 |
Target: 5'- cGGCGGAacccagcguGgGCGGUGCGggGUCUC-CGg -3' miRNA: 3'- aCCGUCU---------CgCGCUAUGUa-UAGAGcGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 44970 | 0.66 | 0.979816 |
Target: 5'- gUGGUAGAGCGgCGGUACGaagagggcgagcCUgGCGa -3' miRNA: 3'- -ACCGUCUCGC-GCUAUGUaua---------GAgCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 20271 | 0.66 | 0.978905 |
Target: 5'- gGGaCGGuGCGagaaGAUACuUGUCUgCGCGg -3' miRNA: 3'- aCC-GUCuCGCg---CUAUGuAUAGA-GCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 20537 | 0.7 | 0.887467 |
Target: 5'- cGGCGGgcacgaagaAGCGCGAgAUAUGUaUCGCGc -3' miRNA: 3'- aCCGUC---------UCGCGCUaUGUAUAgAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 2833 | 0.67 | 0.968054 |
Target: 5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3' miRNA: 3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 138497 | 0.67 | 0.964814 |
Target: 5'- cGGCGGuugccGCGCGAUuuca--CUCGCGa -3' miRNA: 3'- aCCGUCu----CGCGCUAuguauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 117848 | 0.69 | 0.900977 |
Target: 5'- cGGCGGAGUGCGcAUGCAaggcaUgGCGg -3' miRNA: 3'- aCCGUCUCGCGC-UAUGUauag-AgCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 150209 | 0.69 | 0.900977 |
Target: 5'- uUGGCGGccuCGCGGUAUA-GUCUUGCGc -3' miRNA: 3'- -ACCGUCuc-GCGCUAUGUaUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 116421 | 0.69 | 0.907369 |
Target: 5'- aGcGCAGGGCgGCG-UGCAgc-CUCGCGg -3' miRNA: 3'- aC-CGUCUCG-CGCuAUGUauaGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 126882 | 0.69 | 0.911086 |
Target: 5'- aGGCGaaucgccaucgucGGCGCGAaACAgGUCUCGCGc -3' miRNA: 3'- aCCGUc------------UCGCGCUaUGUaUAGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 99028 | 0.69 | 0.913514 |
Target: 5'- cUGGUcGAGCGCGcgGCAgaaaUCGUGg -3' miRNA: 3'- -ACCGuCUCGCGCuaUGUauagAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 153364 | 0.69 | 0.93046 |
Target: 5'- cGGCAGAcaagacGCGCGAaGCGUug--CGCGa -3' miRNA: 3'- aCCGUCU------CGCGCUaUGUAuagaGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 66698 | 0.69 | 0.925061 |
Target: 5'- gGGCGGGGgGCGuacUACGUGUCgcCGgGg -3' miRNA: 3'- aCCGUCUCgCGCu--AUGUAUAGa-GCgC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 3629 | 0.68 | 0.935609 |
Target: 5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3' miRNA: 3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 113512 | 0.68 | 0.945161 |
Target: 5'- gGGCcGAGCGCGA-ACAg--C-CGCGg -3' miRNA: 3'- aCCGuCUCGCGCUaUGUauaGaGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 129391 | 0.68 | 0.947834 |
Target: 5'- gUGGCGGgaauuaauagucAGCGCGGggguuuauUCUCGCGg -3' miRNA: 3'- -ACCGUC------------UCGCGCUauguau--AGAGCGC- -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 22895 | 0.68 | 0.949568 |
Target: 5'- gGGCAGGGCcCGAggguCucuUCUCGCa -3' miRNA: 3'- aCCGUCUCGcGCUau--GuauAGAGCGc -5' |
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24734 | 3' | -52.6 | NC_005264.1 | + | 58500 | 0.67 | 0.957659 |
Target: 5'- cGcGCaAGAGCGCGGUGCGUc-CUCGg- -3' miRNA: 3'- aC-CG-UCUCGCGCUAUGUAuaGAGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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