miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 10834 0.71 0.849664
Target:  5'- aUGGCGauauGCGCGAgcccGCGUGUCUcCGCa -3'
miRNA:   3'- -ACCGUcu--CGCGCUa---UGUAUAGA-GCGc -5'
24734 3' -52.6 NC_005264.1 + 129862 0.7 0.880357
Target:  5'- aGGCGGAGCGCGAaaaucgGCAcGUCUUu-- -3'
miRNA:   3'- aCCGUCUCGCGCUa-----UGUaUAGAGcgc -5'
24734 3' -52.6 NC_005264.1 + 20537 0.7 0.887467
Target:  5'- cGGCGGgcacgaagaAGCGCGAgAUAUGUaUCGCGc -3'
miRNA:   3'- aCCGUC---------UCGCGCUaUGUAUAgAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 9910 0.69 0.900977
Target:  5'- cGGCAGAaagGCGGcGC-UAUCUCGCGc -3'
miRNA:   3'- aCCGUCUcg-CGCUaUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 150209 0.69 0.900977
Target:  5'- uUGGCGGccuCGCGGUAUA-GUCUUGCGc -3'
miRNA:   3'- -ACCGUCuc-GCGCUAUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 117848 0.69 0.900977
Target:  5'- cGGCGGAGUGCGcAUGCAaggcaUgGCGg -3'
miRNA:   3'- aCCGUCUCGCGC-UAUGUauag-AgCGC- -5'
24734 3' -52.6 NC_005264.1 + 116421 0.69 0.907369
Target:  5'- aGcGCAGGGCgGCG-UGCAgc-CUCGCGg -3'
miRNA:   3'- aC-CGUCUCG-CGCuAUGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 126882 0.69 0.911086
Target:  5'- aGGCGaaucgccaucgucGGCGCGAaACAgGUCUCGCGc -3'
miRNA:   3'- aCCGUc------------UCGCGCUaUGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 99028 0.69 0.913514
Target:  5'- cUGGUcGAGCGCGcgGCAgaaaUCGUGg -3'
miRNA:   3'- -ACCGuCUCGCGCuaUGUauagAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 66698 0.69 0.925061
Target:  5'- gGGCGGGGgGCGuacUACGUGUCgcCGgGg -3'
miRNA:   3'- aCCGUCUCgCGCu--AUGUAUAGa-GCgC- -5'
24734 3' -52.6 NC_005264.1 + 153364 0.69 0.93046
Target:  5'- cGGCAGAcaagacGCGCGAaGCGUug--CGCGa -3'
miRNA:   3'- aCCGUCU------CGCGCUaUGUAuagaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 3629 0.68 0.935609
Target:  5'- gGGCGG-GCGCGcugACAU-UCgUCGCGa -3'
miRNA:   3'- aCCGUCuCGCGCua-UGUAuAG-AGCGC- -5'
24734 3' -52.6 NC_005264.1 + 113512 0.68 0.945161
Target:  5'- gGGCcGAGCGCGA-ACAg--C-CGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUaUGUauaGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 129391 0.68 0.947834
Target:  5'- gUGGCGGgaauuaauagucAGCGCGGggguuuauUCUCGCGg -3'
miRNA:   3'- -ACCGUC------------UCGCGCUauguau--AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 107060 0.66 0.983171
Target:  5'- -cGCGGAGCGUGGUuaaGCAgacUCagCGCGa -3'
miRNA:   3'- acCGUCUCGCGCUA---UGUau-AGa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.