miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 107060 0.66 0.983171
Target:  5'- -cGCGGAGCGUGGUuaaGCAgacUCagCGCGa -3'
miRNA:   3'- acCGUCUCGCGCUA---UGUau-AGa-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 37604 0.66 0.983171
Target:  5'- cGGCGGGGgGUcaaaggACGcGUCUCGCa -3'
miRNA:   3'- aCCGUCUCgCGcua---UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 87064 0.66 0.98134
Target:  5'- aGGC-GAGCGCGAacgagaaccagccacACAgc-CUCGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUa--------------UGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 124429 0.66 0.981128
Target:  5'- -cGCAGAGCGCG-UGC---UC-CGCGg -3'
miRNA:   3'- acCGUCUCGCGCuAUGuauAGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 44970 0.66 0.979816
Target:  5'- gUGGUAGAGCGgCGGUACGaagagggcgagcCUgGCGa -3'
miRNA:   3'- -ACCGUCUCGC-GCUAUGUaua---------GAgCGC- -5'
24734 3' -52.6 NC_005264.1 + 20271 0.66 0.978905
Target:  5'- gGGaCGGuGCGagaaGAUACuUGUCUgCGCGg -3'
miRNA:   3'- aCC-GUCuCGCg---CUAUGuAUAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 34097 0.66 0.977482
Target:  5'- cGGCGGgcacaauggcucagcGGCGCGAaACAgcGUCgaggCGCGa -3'
miRNA:   3'- aCCGUC---------------UCGCGCUaUGUa-UAGa---GCGC- -5'
24734 3' -52.6 NC_005264.1 + 37562 0.66 0.976494
Target:  5'- cGGCGacGAcCGCGAcggaggcgGCAaGUCUCGCGg -3'
miRNA:   3'- aCCGU--CUcGCGCUa-------UGUaUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 125925 0.66 0.976494
Target:  5'- cUGGagcCAGAGCagGCGAcgaggaauuaaUACcUGUCUCGCGc -3'
miRNA:   3'- -ACC---GUCUCG--CGCU-----------AUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 79421 0.66 0.976494
Target:  5'- cGGCGGAacccagcguGgGCGGUGCGggGUCUC-CGg -3'
miRNA:   3'- aCCGUCU---------CgCGCUAUGUa-UAGAGcGC- -5'
24734 3' -52.6 NC_005264.1 + 59024 0.68 0.953733
Target:  5'- aGGCAG-GCGCGu--CAggucgGUCUcCGCGc -3'
miRNA:   3'- aCCGUCuCGCGCuauGUa----UAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 36100 0.68 0.953733
Target:  5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3'
miRNA:   3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 58500 0.67 0.957659
Target:  5'- cGcGCaAGAGCGCGGUGCGUc-CUCGg- -3'
miRNA:   3'- aC-CG-UCUCGCGCUAUGUAuaGAGCgc -5'
24734 3' -52.6 NC_005264.1 + 138497 0.67 0.964814
Target:  5'- cGGCGGuugccGCGCGAUuuca--CUCGCGa -3'
miRNA:   3'- aCCGUCu----CGCGCUAuguauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 2833 0.67 0.968054
Target:  5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3'
miRNA:   3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 133047 0.66 0.973065
Target:  5'- cGGCGGuGCGCGuguuucuggCUCGCa -3'
miRNA:   3'- aCCGUCuCGCGCuauguaua-GAGCGc -5'
24734 3' -52.6 NC_005264.1 + 115731 0.66 0.976494
Target:  5'- aUGGUAGGGgGCGcgGCGagcgcUAuacUCUCGCc -3'
miRNA:   3'- -ACCGUCUCgCGCuaUGU-----AU---AGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 83899 0.66 0.983171
Target:  5'- cGGUGGAGCGU---GC-UAUCUCuGCGa -3'
miRNA:   3'- aCCGUCUCGCGcuaUGuAUAGAG-CGC- -5'
24734 3' -52.6 NC_005264.1 + 93699 0.72 0.778913
Target:  5'- gUGGCAGuAGCGCGGgccACAgAUCagGCGg -3'
miRNA:   3'- -ACCGUC-UCGCGCUa--UGUaUAGagCGC- -5'
24734 3' -52.6 NC_005264.1 + 764 0.72 0.797609
Target:  5'- cGGCGGAGCcccuacGCGAcACGguUCUUGCGg -3'
miRNA:   3'- aCCGUCUCG------CGCUaUGUauAGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.