miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 3' -52.6 NC_005264.1 + 125925 0.66 0.976494
Target:  5'- cUGGagcCAGAGCagGCGAcgaggaauuaaUACcUGUCUCGCGc -3'
miRNA:   3'- -ACC---GUCUCG--CGCU-----------AUGuAUAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 58018 0.66 0.973887
Target:  5'- cGGCGGAcaggccgucGUGCGGcGCccgcucGUCUCGCGa -3'
miRNA:   3'- aCCGUCU---------CGCGCUaUGua----UAGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 133047 0.66 0.973065
Target:  5'- cGGCGGuGCGCGuguuucuggCUCGCa -3'
miRNA:   3'- aCCGUCuCGCGCuauguaua-GAGCGc -5'
24734 3' -52.6 NC_005264.1 + 138602 0.67 0.971076
Target:  5'- cGGCAGcGGUGgGGUGCAaGUCaUCGUc -3'
miRNA:   3'- aCCGUC-UCGCgCUAUGUaUAG-AGCGc -5'
24734 3' -52.6 NC_005264.1 + 46722 0.67 0.971076
Target:  5'- cGGCAGAgGCGCagcGCuAUGUCUgGCa -3'
miRNA:   3'- aCCGUCU-CGCGcuaUG-UAUAGAgCGc -5'
24734 3' -52.6 NC_005264.1 + 71553 0.67 0.968054
Target:  5'- cUGGCGGAGCuCG-UGCAcAUC-CGCa -3'
miRNA:   3'- -ACCGUCUCGcGCuAUGUaUAGaGCGc -5'
24734 3' -52.6 NC_005264.1 + 121859 0.67 0.968054
Target:  5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3'
miRNA:   3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 2833 0.67 0.968054
Target:  5'- uUGGCGGAGgGcCGGU-CGcg-CUCGCGc -3'
miRNA:   3'- -ACCGUCUCgC-GCUAuGUauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 138497 0.67 0.964814
Target:  5'- cGGCGGuugccGCGCGAUuuca--CUCGCGa -3'
miRNA:   3'- aCCGUCu----CGCGCUAuguauaGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 16655 0.67 0.961708
Target:  5'- gGuGCGGAGCGCGAgggauugcagagaugACGUGUUUC-CGu -3'
miRNA:   3'- aC-CGUCUCGCGCUa--------------UGUAUAGAGcGC- -5'
24734 3' -52.6 NC_005264.1 + 58500 0.67 0.957659
Target:  5'- cGcGCaAGAGCGCGGUGCGUc-CUCGg- -3'
miRNA:   3'- aC-CG-UCUCGCGCUAUGUAuaGAGCgc -5'
24734 3' -52.6 NC_005264.1 + 162421 0.68 0.953733
Target:  5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3'
miRNA:   3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5'
24734 3' -52.6 NC_005264.1 + 36100 0.68 0.953733
Target:  5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3'
miRNA:   3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 59024 0.68 0.953733
Target:  5'- aGGCAG-GCGCGu--CAggucgGUCUcCGCGc -3'
miRNA:   3'- aCCGUCuCGCGCuauGUa----UAGA-GCGC- -5'
24734 3' -52.6 NC_005264.1 + 43394 0.68 0.953733
Target:  5'- gGGCAGAgggGCGCGAagccUACGUcUCUgGUa -3'
miRNA:   3'- aCCGUCU---CGCGCU----AUGUAuAGAgCGc -5'
24734 3' -52.6 NC_005264.1 + 155127 0.68 0.953733
Target:  5'- aUGGCGGAcagGUGCGAaacggACGcGUCUUGCu -3'
miRNA:   3'- -ACCGUCU---CGCGCUa----UGUaUAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 22895 0.68 0.949568
Target:  5'- gGGCAGGGCcCGAggguCucuUCUCGCa -3'
miRNA:   3'- aCCGUCUCGcGCUau--GuauAGAGCGc -5'
24734 3' -52.6 NC_005264.1 + 129391 0.68 0.947834
Target:  5'- gUGGCGGgaauuaauagucAGCGCGGggguuuauUCUCGCGg -3'
miRNA:   3'- -ACCGUC------------UCGCGCUauguau--AGAGCGC- -5'
24734 3' -52.6 NC_005264.1 + 113512 0.68 0.945161
Target:  5'- gGGCcGAGCGCGA-ACAg--C-CGCGg -3'
miRNA:   3'- aCCGuCUCGCGCUaUGUauaGaGCGC- -5'
24734 3' -52.6 NC_005264.1 + 18106 0.68 0.939064
Target:  5'- cGGCAGAugGCGCGAgaggcuaagagacgUGCuugcUGUCUgGCGc -3'
miRNA:   3'- aCCGUCU--CGCGCU--------------AUGu---AUAGAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.