miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24734 5' -55.7 NC_005264.1 + 1169 0.66 0.937869
Target:  5'- gUCUGCCGGcgcgcgauggggguACGCAGcggaccGGGCGUCcGCGGc -3'
miRNA:   3'- -GGGCGGCC--------------UGUGUC------UCUGCAGaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 15903 0.66 0.93452
Target:  5'- gCCGCC-GACcgGCAGGGACGUgUAgGu -3'
miRNA:   3'- gGGCGGcCUG--UGUCUCUGCAgAUgCu -5'
24734 5' -55.7 NC_005264.1 + 36433 0.66 0.93452
Target:  5'- aCCUGCaGGcCGCGGAGACGaCUugccucuccucgGCGAa -3'
miRNA:   3'- -GGGCGgCCuGUGUCUCUGCaGA------------UGCU- -5'
24734 5' -55.7 NC_005264.1 + 94677 0.66 0.93452
Target:  5'- gCCCGCCGuGAUGCAGA--UGUUgcACGAa -3'
miRNA:   3'- -GGGCGGC-CUGUGUCUcuGCAGa-UGCU- -5'
24734 5' -55.7 NC_005264.1 + 80793 0.66 0.93452
Target:  5'- cCUgGCCGuagccaucGAUACAGAGuCGUCUGgGGa -3'
miRNA:   3'- -GGgCGGC--------CUGUGUCUCuGCAGAUgCU- -5'
24734 5' -55.7 NC_005264.1 + 155092 0.66 0.92954
Target:  5'- aCUGCC-GACGCGGAGAgccCGUUUcCGAg -3'
miRNA:   3'- gGGCGGcCUGUGUCUCU---GCAGAuGCU- -5'
24734 5' -55.7 NC_005264.1 + 80492 0.66 0.92954
Target:  5'- gCCUGCCuGGCACAcguGCGUCUACu- -3'
miRNA:   3'- -GGGCGGcCUGUGUcucUGCAGAUGcu -5'
24734 5' -55.7 NC_005264.1 + 65374 0.66 0.92954
Target:  5'- gCCGCCGGGuagagucuCGCAGGcGACGgaggUGCGGg -3'
miRNA:   3'- gGGCGGCCU--------GUGUCU-CUGCag--AUGCU- -5'
24734 5' -55.7 NC_005264.1 + 36065 0.66 0.92954
Target:  5'- aCUGCC-GACGCGGAGAgccCGUUUcCGAg -3'
miRNA:   3'- gGGCGGcCUGUGUCUCU---GCAGAuGCU- -5'
24734 5' -55.7 NC_005264.1 + 149742 0.66 0.92954
Target:  5'- -gCGCCGGcGgGCAGAGGCGagcCUACa- -3'
miRNA:   3'- ggGCGGCC-UgUGUCUCUGCa--GAUGcu -5'
24734 5' -55.7 NC_005264.1 + 87129 0.66 0.928001
Target:  5'- gCCCGCgGGGCGCAccagucuucgcgccGAaaGACGgcgCUGCGc -3'
miRNA:   3'- -GGGCGgCCUGUGU--------------CU--CUGCa--GAUGCu -5'
24734 5' -55.7 NC_005264.1 + 145487 0.67 0.926442
Target:  5'- gCCGCCGccagcugccgcggaaGGCACuGcAGACGUCcACGGc -3'
miRNA:   3'- gGGCGGC---------------CUGUGuC-UCUGCAGaUGCU- -5'
24734 5' -55.7 NC_005264.1 + 111072 0.67 0.921095
Target:  5'- uCgCGCCGGGCGauugcaucucgcucuCAGAGAUGggCUACa- -3'
miRNA:   3'- -GgGCGGCCUGU---------------GUCUCUGCa-GAUGcu -5'
24734 5' -55.7 NC_005264.1 + 6212 0.67 0.918892
Target:  5'- aUCUGUugaaCGGGCcuACGGAGACGgguUCUGCGGc -3'
miRNA:   3'- -GGGCG----GCCUG--UGUCUCUGC---AGAUGCU- -5'
24734 5' -55.7 NC_005264.1 + 75726 0.67 0.918335
Target:  5'- cCCCG-CGGGCGcCGGAGGCcaGUCUgggugcguuacccGCGAg -3'
miRNA:   3'- -GGGCgGCCUGU-GUCUCUG--CAGA-------------UGCU- -5'
24734 5' -55.7 NC_005264.1 + 100218 0.67 0.913225
Target:  5'- cUCCGCgGGGCGCAGuugcucGGaACGUCcGCGc -3'
miRNA:   3'- -GGGCGgCCUGUGUC------UC-UGCAGaUGCu -5'
24734 5' -55.7 NC_005264.1 + 155373 0.67 0.90733
Target:  5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3'
miRNA:   3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 36346 0.67 0.90733
Target:  5'- gCCGCacgacguucucCGGACGCGGAG-CGUaacgACGAc -3'
miRNA:   3'- gGGCG-----------GCCUGUGUCUCuGCAga--UGCU- -5'
24734 5' -55.7 NC_005264.1 + 67390 0.67 0.901209
Target:  5'- gCCCGCCGG-CGCGGuaGCGUauuccACGAc -3'
miRNA:   3'- -GGGCGGCCuGUGUCucUGCAga---UGCU- -5'
24734 5' -55.7 NC_005264.1 + 6824 0.68 0.894865
Target:  5'- gUUGCCGGAgGCGGcGGCGaCUAUGGc -3'
miRNA:   3'- gGGCGGCCUgUGUCuCUGCaGAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.