miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24735 3' -53.8 NC_005264.1 + 120695 0.66 0.943484
Target:  5'- aACAAGGCCUcgcgccgacaaaGCCGGcGGuCGGGCgGAGg -3'
miRNA:   3'- aUGUUCCGGA------------UGGUC-CU-GUUCGaCUU- -5'
24735 3' -53.8 NC_005264.1 + 53953 0.66 0.938643
Target:  5'- gACGAGGCUUAUaaaucggAGGAgGAGCUGu- -3'
miRNA:   3'- aUGUUCCGGAUGg------UCCUgUUCGACuu -5'
24735 3' -53.8 NC_005264.1 + 14091 0.66 0.938643
Target:  5'- gAC-AGGCgUGCCuGGACGGGCa--- -3'
miRNA:   3'- aUGuUCCGgAUGGuCCUGUUCGacuu -5'
24735 3' -53.8 NC_005264.1 + 93845 0.66 0.938643
Target:  5'- gACAGGGCCgcggGCCAcuGGcccGCuAAGCUGGc -3'
miRNA:   3'- aUGUUCCGGa---UGGU--CC---UG-UUCGACUu -5'
24735 3' -53.8 NC_005264.1 + 2404 0.66 0.933544
Target:  5'- gGCGccGGCCUGCCuAGGAagaAAGCgGAGg -3'
miRNA:   3'- aUGUu-CCGGAUGG-UCCUg--UUCGaCUU- -5'
24735 3' -53.8 NC_005264.1 + 121431 0.66 0.933544
Target:  5'- gGCGccGGCCUGCCuAGGAagaAAGCgGAGg -3'
miRNA:   3'- aUGUu-CCGGAUGG-UCCUg--UUCGaCUU- -5'
24735 3' -53.8 NC_005264.1 + 99400 0.66 0.928186
Target:  5'- aGCGGGGUaUGCCAGG-CAAGCg--- -3'
miRNA:   3'- aUGUUCCGgAUGGUCCuGUUCGacuu -5'
24735 3' -53.8 NC_005264.1 + 124123 0.66 0.928186
Target:  5'- --aGGGGuCCUcuacGCCugGGGGCGAGCUGGGa -3'
miRNA:   3'- augUUCC-GGA----UGG--UCCUGUUCGACUU- -5'
24735 3' -53.8 NC_005264.1 + 5096 0.66 0.928186
Target:  5'- --aGGGGuCCUcuacGCCugGGGGCGAGCUGGGa -3'
miRNA:   3'- augUUCC-GGA----UGG--UCCUGUUCGACUU- -5'
24735 3' -53.8 NC_005264.1 + 123357 0.67 0.916689
Target:  5'- aGCGcAGGCCUGCCccuGGC-GGCUGAGc -3'
miRNA:   3'- aUGU-UCCGGAUGGuc-CUGuUCGACUU- -5'
24735 3' -53.8 NC_005264.1 + 4330 0.67 0.916689
Target:  5'- aGCGcAGGCCUGCCccuGGC-GGCUGAGc -3'
miRNA:   3'- aUGU-UCCGGAUGGuc-CUGuUCGACUU- -5'
24735 3' -53.8 NC_005264.1 + 140866 0.67 0.916689
Target:  5'- cGCcAGGCCgacUGCCAGGAaaugacAGCUGGc -3'
miRNA:   3'- aUGuUCCGG---AUGGUCCUgu----UCGACUu -5'
24735 3' -53.8 NC_005264.1 + 64681 0.67 0.897509
Target:  5'- ---uGGGCCUGCCGgcGGGCAGGCc--- -3'
miRNA:   3'- auguUCCGGAUGGU--CCUGUUCGacuu -5'
24735 3' -53.8 NC_005264.1 + 86031 0.67 0.897509
Target:  5'- aACGAGGCC-GCCAGGAaccuGCUa-- -3'
miRNA:   3'- aUGUUCCGGaUGGUCCUguu-CGAcuu -5'
24735 3' -53.8 NC_005264.1 + 154577 0.68 0.883463
Target:  5'- aACGAGGCggacACCAGGGCGccGCUGGc -3'
miRNA:   3'- aUGUUCCGga--UGGUCCUGUu-CGACUu -5'
24735 3' -53.8 NC_005264.1 + 122774 0.68 0.844209
Target:  5'- aGCGGGGCCUcuugccGCCGGGGC--GCUGc- -3'
miRNA:   3'- aUGUUCCGGA------UGGUCCUGuuCGACuu -5'
24735 3' -53.8 NC_005264.1 + 3748 0.68 0.844209
Target:  5'- aGCGGGGCCUcuugccGCCGGGGC--GCUGc- -3'
miRNA:   3'- aUGUUCCGGA------UGGUCCUGuuCGACuu -5'
24735 3' -53.8 NC_005264.1 + 72041 0.69 0.818087
Target:  5'- aACAGGGUCUACagCGGGaaacaaggcgGCAAGCUGGc -3'
miRNA:   3'- aUGUUCCGGAUG--GUCC----------UGUUCGACUu -5'
24735 3' -53.8 NC_005264.1 + 104827 0.71 0.741063
Target:  5'- cACGAcGGCCUguccGCCGGGGCc-GCUGAGc -3'
miRNA:   3'- aUGUU-CCGGA----UGGUCCUGuuCGACUU- -5'
24735 3' -53.8 NC_005264.1 + 11056 0.76 0.44146
Target:  5'- gGCGGGGCCUGgCGGGGCAAGUa--- -3'
miRNA:   3'- aUGUUCCGGAUgGUCCUGUUCGacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.