Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24736 | 3' | -62.7 | NC_005264.1 | + | 161929 | 0.67 | 0.59608 |
Target: 5'- gACCUUCCCCCcagcggcccgcGACaCgggGCCGUacaCCCa -3' miRNA: 3'- aUGGGAGGGGG-----------CUGaGa--CGGCAg--GGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 94820 | 0.67 | 0.59608 |
Target: 5'- cACCC-CUCUCGAagaUCUGCCcgacCCCCg -3' miRNA: 3'- aUGGGaGGGGGCUg--AGACGGca--GGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 60083 | 0.66 | 0.664034 |
Target: 5'- gGCCCgCCCCUaGCcuaCUGCCGgcggCCCa -3' miRNA: 3'- aUGGGaGGGGGcUGa--GACGGCa---GGGg -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 99051 | 0.68 | 0.519914 |
Target: 5'- gGgCCUCCCCCGAgUCgguguuauCCGUCgaaCCCa -3' miRNA: 3'- aUgGGAGGGGGCUgAGac------GGCAG---GGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 114434 | 0.66 | 0.615473 |
Target: 5'- aUGCCC-CCaCCCG-CUCcugGCCGcCgCCCg -3' miRNA: 3'- -AUGGGaGG-GGGCuGAGa--CGGCaG-GGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 118836 | 0.66 | 0.63491 |
Target: 5'- gGCCCa-CCUCGACcCUGCCcaaGUCCgCCu -3' miRNA: 3'- aUGGGagGGGGCUGaGACGG---CAGG-GG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 142585 | 0.66 | 0.664034 |
Target: 5'- cACCgUCCCCUGAa--UGCCGgCCgCg -3' miRNA: 3'- aUGGgAGGGGGCUgagACGGCaGGgG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 159953 | 0.67 | 0.576783 |
Target: 5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3' miRNA: 3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 56532 | 0.66 | 0.63491 |
Target: 5'- cGCCCUgCCCgCCGcagCUGUCGcUCUCCg -3' miRNA: 3'- aUGGGA-GGG-GGCugaGACGGC-AGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 68323 | 0.66 | 0.633938 |
Target: 5'- cUGCCCUCCCacguggCCGACggCUGCacuaacgcgagcaUGUUCCUg -3' miRNA: 3'- -AUGGGAGGG------GGCUGa-GACG-------------GCAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 30332 | 0.68 | 0.492299 |
Target: 5'- --aCCUCUCCCGA----GCUGUCCCCc -3' miRNA: 3'- augGGAGGGGGCUgagaCGGCAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 149489 | 0.68 | 0.519914 |
Target: 5'- cGCUCgagCCgCUCGAUUCgcGCCGUUCCCu -3' miRNA: 3'- aUGGGa--GG-GGGCUGAGa-CGGCAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 9152 | 0.66 | 0.65434 |
Target: 5'- aGCCCUCCagaGACcc--CCGUCCCCu -3' miRNA: 3'- aUGGGAGGgggCUGagacGGCAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 62284 | 0.72 | 0.315463 |
Target: 5'- cGCCCuugUCCCgCGAuCUCgGCCGUCCUUa -3' miRNA: 3'- aUGGG---AGGGgGCU-GAGaCGGCAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 12922 | 0.74 | 0.23034 |
Target: 5'- -gUCCUCCCCCGACg----CGUCCCCg -3' miRNA: 3'- auGGGAGGGGGCUGagacgGCAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 40926 | 0.67 | 0.576783 |
Target: 5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3' miRNA: 3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 39297 | 0.67 | 0.557628 |
Target: 5'- -cCCCUCCCCCuccGCggacGCCcaGUCCCCc -3' miRNA: 3'- auGGGAGGGGGc--UGaga-CGG--CAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 35058 | 0.67 | 0.575822 |
Target: 5'- cGCCuCUCCCCagagaggCGAUUCgGUCcUCCCCg -3' miRNA: 3'- aUGG-GAGGGG-------GCUGAGaCGGcAGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 114889 | 0.69 | 0.456577 |
Target: 5'- cACCUUCCCCaCG-CUCgUGCCGagccguUCUCCg -3' miRNA: 3'- aUGGGAGGGG-GCuGAG-ACGGC------AGGGG- -5' |
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24736 | 3' | -62.7 | NC_005264.1 | + | 38519 | 0.71 | 0.351148 |
Target: 5'- cGCCCgCCCCaCGGgUCaGCCGccgCCCCg -3' miRNA: 3'- aUGGGaGGGG-GCUgAGaCGGCa--GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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