miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24736 3' -62.7 NC_005264.1 + 9152 0.66 0.65434
Target:  5'- aGCCCUCCagaGACcc--CCGUCCCCu -3'
miRNA:   3'- aUGGGAGGgggCUGagacGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 9763 0.7 0.422295
Target:  5'- cGCCgugCUCCCaCCuacGCUCUGUgCGUCCCCu -3'
miRNA:   3'- aUGG---GAGGG-GGc--UGAGACG-GCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 12922 0.74 0.23034
Target:  5'- -gUCCUCCCCCGACg----CGUCCCCg -3'
miRNA:   3'- auGGGAGGGGGCUGagacgGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 13376 0.68 0.519914
Target:  5'- gGCCCgcggcUCCCCCGAgaccucCUCcGCCGcagcUCUCCg -3'
miRNA:   3'- aUGGG-----AGGGGGCU------GAGaCGGC----AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 19560 0.71 0.373896
Target:  5'- gUGCUCUUCCUCGguaUCaaagagguacaUGCCGUCCCCg -3'
miRNA:   3'- -AUGGGAGGGGGCug-AG-----------ACGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 23513 0.69 0.47427
Target:  5'- -uUCCUCCCCCGuACggccCUGUCGaCCCg -3'
miRNA:   3'- auGGGAGGGGGC-UGa---GACGGCaGGGg -5'
24736 3' -62.7 NC_005264.1 + 30247 0.67 0.557628
Target:  5'- cGCCCUUCCCCGGuCcCgcccgcGCCGcUCUCCu -3'
miRNA:   3'- aUGGGAGGGGGCU-GaGa-----CGGC-AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 30332 0.68 0.492299
Target:  5'- --aCCUCUCCCGA----GCUGUCCCCc -3'
miRNA:   3'- augGGAGGGGGCUgagaCGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 30489 0.7 0.397623
Target:  5'- cGCCCcucUCCUCCuGCUCcgcgcgGCCGUCCuCCg -3'
miRNA:   3'- aUGGG---AGGGGGcUGAGa-----CGGCAGG-GG- -5'
24736 3' -62.7 NC_005264.1 + 35058 0.67 0.575822
Target:  5'- cGCCuCUCCCCagagaggCGAUUCgGUCcUCCCCg -3'
miRNA:   3'- aUGG-GAGGGG-------GCUGAGaCGGcAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 36998 0.7 0.413968
Target:  5'- cGCCg-CCUCCGGCaacaccCUGaCCGUCCCCu -3'
miRNA:   3'- aUGGgaGGGGGCUGa-----GAC-GGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 37330 0.66 0.664034
Target:  5'- gGCCCUCgauggccgcgcaCCCCGACguucGCCGcgCCgCCg -3'
miRNA:   3'- aUGGGAG------------GGGGCUGaga-CGGCa-GG-GG- -5'
24736 3' -62.7 NC_005264.1 + 38519 0.71 0.351148
Target:  5'- cGCCCgCCCCaCGGgUCaGCCGccgCCCCg -3'
miRNA:   3'- aUGGGaGGGG-GCUgAGaCGGCa--GGGG- -5'
24736 3' -62.7 NC_005264.1 + 38737 0.7 0.405744
Target:  5'- -cCCCUCCCCgGACgggCUGgCCGccuugcgaCCCCu -3'
miRNA:   3'- auGGGAGGGGgCUGa--GAC-GGCa-------GGGG- -5'
24736 3' -62.7 NC_005264.1 + 39297 0.67 0.557628
Target:  5'- -cCCCUCCCCCuccGCggacGCCcaGUCCCCc -3'
miRNA:   3'- auGGGAGGGGGc--UGaga-CGG--CAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 40410 0.67 0.557628
Target:  5'- -uCCCUCCCCCG-Cgca-CCGaCCCCg -3'
miRNA:   3'- auGGGAGGGGGCuGagacGGCaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 40926 0.67 0.576783
Target:  5'- cGCCCUCCCC--GCcgcGCCGcgCCCCg -3'
miRNA:   3'- aUGGGAGGGGgcUGagaCGGCa-GGGG- -5'
24736 3' -62.7 NC_005264.1 + 42903 0.67 0.586416
Target:  5'- gACCUUCCCCCcgcggcccgcGACaCgggGCCGUacaCCCa -3'
miRNA:   3'- aUGGGAGGGGG----------CUGaGa--CGGCAg--GGG- -5'
24736 3' -62.7 NC_005264.1 + 43724 0.68 0.492299
Target:  5'- cGCCCUCCCCCaGCagaGCCcG-CCCCu -3'
miRNA:   3'- aUGGGAGGGGGcUGagaCGG-CaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 53743 0.68 0.501432
Target:  5'- gUGCCCgUCUCCGGC---GCCGUCCUCg -3'
miRNA:   3'- -AUGGGaGGGGGCUGagaCGGCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.