miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24736 3' -62.7 NC_005264.1 + 114768 0.67 0.567185
Target:  5'- uUGCCCUgCgCCG-CUCgGCCGaugUCCCUg -3'
miRNA:   3'- -AUGGGAgGgGGCuGAGaCGGC---AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 149274 0.67 0.557628
Target:  5'- cGCCCUUCCCCGGuCcCgcccgcGCCGcUCUCCu -3'
miRNA:   3'- aUGGGAGGGGGCU-GaGa-----CGGC-AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 30247 0.67 0.557628
Target:  5'- cGCCCUUCCCCGGuCcCgcccgcGCCGcUCUCCu -3'
miRNA:   3'- aUGGGAGGGGGCU-GaGa-----CGGC-AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 40410 0.67 0.557628
Target:  5'- -uCCCUCCCCCG-Cgca-CCGaCCCCg -3'
miRNA:   3'- auGGGAGGGGGCuGagacGGCaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 39297 0.67 0.557628
Target:  5'- -cCCCUCCCCCuccGCggacGCCcaGUCCCCc -3'
miRNA:   3'- auGGGAGGGGGc--UGaga-CGG--CAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 158324 0.67 0.557628
Target:  5'- -cCCCUCCCCCuccGCggacGCCcaGUCCCCc -3'
miRNA:   3'- auGGGAGGGGGc--UGaga-CGG--CAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 159437 0.67 0.557628
Target:  5'- -uCCCUCCCCCG-Cgca-CCGaCCCCg -3'
miRNA:   3'- auGGGAGGGGGCuGagacGGCaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 99051 0.68 0.519914
Target:  5'- gGgCCUCCCCCGAgUCgguguuauCCGUCgaaCCCa -3'
miRNA:   3'- aUgGGAGGGGGCUgAGac------GGCAG---GGG- -5'
24736 3' -62.7 NC_005264.1 + 132403 0.68 0.519914
Target:  5'- gGCCCgcggcUCCCCCGAgaccucCUCcGCCGcagcUCUCCg -3'
miRNA:   3'- aUGGG-----AGGGGGCU------GAGaCGGC----AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 149489 0.68 0.519914
Target:  5'- cGCUCgagCCgCUCGAUUCgcGCCGUUCCCu -3'
miRNA:   3'- aUGGGa--GG-GGGCUGAGa-CGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 13376 0.68 0.519914
Target:  5'- gGCCCgcggcUCCCCCGAgaccucCUCcGCCGcagcUCUCCg -3'
miRNA:   3'- aUGGG-----AGGGGGCU------GAGaCGGC----AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 53743 0.68 0.501432
Target:  5'- gUGCCCgUCUCCGGC---GCCGUCCUCg -3'
miRNA:   3'- -AUGGGaGGGGGCUGagaCGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 43724 0.68 0.492299
Target:  5'- cGCCCUCCCCCaGCagaGCCcG-CCCCu -3'
miRNA:   3'- aUGGGAGGGGGcUGagaCGG-CaGGGG- -5'
24736 3' -62.7 NC_005264.1 + 149359 0.68 0.492299
Target:  5'- --aCCUCUCCCGA----GCUGUCCCCc -3'
miRNA:   3'- augGGAGGGGGCUgagaCGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 30332 0.68 0.492299
Target:  5'- --aCCUCUCCCGA----GCUGUCCCCc -3'
miRNA:   3'- augGGAGGGGGCUgagaCGGCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 23513 0.69 0.47427
Target:  5'- -uUCCUCCCCCGuACggccCUGUCGaCCCg -3'
miRNA:   3'- auGGGAGGGGGC-UGa---GACGGCaGGGg -5'
24736 3' -62.7 NC_005264.1 + 114889 0.69 0.456577
Target:  5'- cACCUUCCCCaCG-CUCgUGCCGagccguUCUCCg -3'
miRNA:   3'- aUGGGAGGGG-GCuGAG-ACGGC------AGGGG- -5'
24736 3' -62.7 NC_005264.1 + 59285 0.69 0.447865
Target:  5'- aACCCaUCUgCGGCgUCUGCCGUUCCg -3'
miRNA:   3'- aUGGGaGGGgGCUG-AGACGGCAGGGg -5'
24736 3' -62.7 NC_005264.1 + 9763 0.7 0.422295
Target:  5'- cGCCgugCUCCCaCCuacGCUCUGUgCGUCCCCu -3'
miRNA:   3'- aUGG---GAGGG-GGc--UGAGACG-GCAGGGG- -5'
24736 3' -62.7 NC_005264.1 + 156025 0.7 0.413968
Target:  5'- cGCCg-CCUCCGGCaacaccCUGaCCGUCCCCu -3'
miRNA:   3'- aUGGgaGGGGGCUGa-----GAC-GGCAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.