Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24736 | 5' | -56.5 | NC_005264.1 | + | 143596 | 1.1 | 0.002435 |
Target: 5'- gGAGGGAACGAGAAUGGCGCGGGGUACa -3' miRNA: 3'- -CUCCCUUGCUCUUACCGCGCCCCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 132569 | 0.67 | 0.838033 |
Target: 5'- aGGGGGAggaggaagAgGAGAGcGGCGCGGGcGg-- -3' miRNA: 3'- -CUCCCU--------UgCUCUUaCCGCGCCC-Caug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 84910 | 0.69 | 0.767476 |
Target: 5'- -cGGGAggGCGGGAAgagccaGGCGCGGGa--- -3' miRNA: 3'- cuCCCU--UGCUCUUa-----CCGCGCCCcaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 28025 | 0.69 | 0.767476 |
Target: 5'- -cGGGGGCGGGAGgucuuccGGCGCGcgcgacgccGGGUAa -3' miRNA: 3'- cuCCCUUGCUCUUa------CCGCGC---------CCCAUg -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 16380 | 0.69 | 0.738812 |
Target: 5'- gGGGGGGAgGGGAugcccGUGGCGCauuggcacucGGGGagGCa -3' miRNA: 3'- -CUCCCUUgCUCU-----UACCGCG----------CCCCa-UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 3666 | 0.7 | 0.70932 |
Target: 5'- -uGGGGGCGAcuGGcauUGGUGCGGGGccugGCg -3' miRNA: 3'- cuCCCUUGCU--CUu--ACCGCGCCCCa---UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 106728 | 0.66 | 0.890254 |
Target: 5'- uAGuGGucGACaAGGAUGGUGCGGGGg-- -3' miRNA: 3'- cUC-CC--UUGcUCUUACCGCGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 162239 | 0.66 | 0.876385 |
Target: 5'- -cGGGGGgGGGGggGGCuacgGCGGGGcugGCg -3' miRNA: 3'- cuCCCUUgCUCUuaCCG----CGCCCCa--UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 132083 | 0.67 | 0.869124 |
Target: 5'- cGAGGGGA-GAGAAUuuucGG-GCGGGGa-- -3' miRNA: 3'- -CUCCCUUgCUCUUA----CCgCGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 116433 | 0.67 | 0.838033 |
Target: 5'- -uGGGGGCGuc--UGGcCGCGGGGgcgACg -3' miRNA: 3'- cuCCCUUGCucuuACC-GCGCCCCa--UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 52201 | 0.69 | 0.767476 |
Target: 5'- uGAGGGccGugGGGcgcGGUGGCGCGagcuGGUACg -3' miRNA: 3'- -CUCCC--UugCUC---UUACCGCGCc---CCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 19414 | 0.76 | 0.374319 |
Target: 5'- uGGGGGAgGCGAGGcgccggguGUGGcCGCGGGGcGCg -3' miRNA: 3'- -CUCCCU-UGCUCU--------UACC-GCGCCCCaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 25942 | 0.67 | 0.869124 |
Target: 5'- cGAGGcGAcgaagAUGAGGAcGGCGCGGacguGUGCa -3' miRNA: 3'- -CUCC-CU-----UGCUCUUaCCGCGCCc---CAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 6972 | 0.75 | 0.407745 |
Target: 5'- aAGuGAugAUGAGAGUGGCGCGGGGUu- -3' miRNA: 3'- cUCcCU--UGCUCUUACCGCGCCCCAug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 150210 | 0.68 | 0.786004 |
Target: 5'- gGAGGGcgAGCGAGug-GGaCGgGGGGcUGCg -3' miRNA: 3'- -CUCCC--UUGCUCuuaCC-GCgCCCC-AUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 132367 | 0.66 | 0.876385 |
Target: 5'- aGAGGGGcGCGAGGAUGaaCGuCGGGGc-- -3' miRNA: 3'- -CUCCCU-UGCUCUUACc-GC-GCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 56915 | 0.66 | 0.909364 |
Target: 5'- -uGGGaAGCGAaGAUGGCGUagaGGGGgcaaGCg -3' miRNA: 3'- cuCCC-UUGCUcUUACCGCG---CCCCa---UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 47383 | 0.75 | 0.407745 |
Target: 5'- -uGGcGAuaauaaGCGAGAGUGGCGCGugguuGGGUGCg -3' miRNA: 3'- cuCC-CU------UGCUCUUACCGCGC-----CCCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 162344 | 0.67 | 0.846101 |
Target: 5'- gGAGGGAG-GAGGGaGGaGCGGGGg-- -3' miRNA: 3'- -CUCCCUUgCUCUUaCCgCGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 102085 | 0.69 | 0.7805 |
Target: 5'- gGGGGGAAgcagaaggacgagucUGAGGAcGGCugGCGGcGGUACg -3' miRNA: 3'- -CUCCCUU---------------GCUCUUaCCG--CGCC-CCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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