Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24736 | 5' | -56.5 | NC_005264.1 | + | 13542 | 0.67 | 0.838033 |
Target: 5'- aGGGGGAggaggaagAgGAGAGcGGCGCGGGcGg-- -3' miRNA: 3'- -CUCCCU--------UgCUCUUaCCGCGCCC-Caug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 44116 | 0.67 | 0.82978 |
Target: 5'- gGAGGGGGCGGGAuagcGGCgauuacgaGCGGGaGgGCa -3' miRNA: 3'- -CUCCCUUGCUCUua--CCG--------CGCCC-CaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 150210 | 0.68 | 0.786004 |
Target: 5'- gGAGGGcgAGCGAGug-GGaCGgGGGGcUGCg -3' miRNA: 3'- -CUCCC--UUGCUCuuaCC-GCgCCCC-AUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 31183 | 0.68 | 0.786004 |
Target: 5'- gGAGGGcgAGCGAGug-GGaCGgGGGGcUGCg -3' miRNA: 3'- -CUCCC--UUGCUCuuaCC-GCgCCCC-AUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 102085 | 0.69 | 0.7805 |
Target: 5'- gGGGGGAAgcagaaggacgagucUGAGGAcGGCugGCGGcGGUACg -3' miRNA: 3'- -CUCCCUU---------------GCUCUUaCCG--CGCC-CCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 52641 | 0.69 | 0.776804 |
Target: 5'- -cGGGAAgGAGAuGUGGCcgaugacucgGCGGGGaaggGCa -3' miRNA: 3'- cuCCCUUgCUCU-UACCG----------CGCCCCa---UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 28025 | 0.69 | 0.767476 |
Target: 5'- -cGGGGGCGGGAGgucuuccGGCGCGcgcgacgccGGGUAa -3' miRNA: 3'- cuCCCUUGCUCUUa------CCGCGC---------CCCAUg -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 52201 | 0.69 | 0.767476 |
Target: 5'- uGAGGGccGugGGGcgcGGUGGCGCGagcuGGUACg -3' miRNA: 3'- -CUCCC--UugCUC---UUACCGCGCc---CCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 84910 | 0.69 | 0.767476 |
Target: 5'- -cGGGAggGCGGGAAgagccaGGCGCGGGa--- -3' miRNA: 3'- cuCCCU--UGCUCUUa-----CCGCGCCCcaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 155286 | 0.69 | 0.767476 |
Target: 5'- -cGGGGACGAuGAUGuaGCGUGGGGa-- -3' miRNA: 3'- cuCCCUUGCUcUUAC--CGCGCCCCaug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 48669 | 0.69 | 0.748471 |
Target: 5'- cGGGGGGCGAGGAgaucugGGCGCGaGucUGCu -3' miRNA: 3'- cUCCCUUGCUCUUa-----CCGCGC-CccAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 74949 | 0.69 | 0.738812 |
Target: 5'- -cGGGAcgcgACGAGggUGGCGuCGuacugcGGGUAa -3' miRNA: 3'- cuCCCU----UGCUCuuACCGC-GC------CCCAUg -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 16380 | 0.69 | 0.738812 |
Target: 5'- gGGGGGGAgGGGAugcccGUGGCGCauuggcacucGGGGagGCa -3' miRNA: 3'- -CUCCCUUgCUCU-----UACCGCG----------CCCCa-UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 3666 | 0.7 | 0.70932 |
Target: 5'- -uGGGGGCGAcuGGcauUGGUGCGGGGccugGCg -3' miRNA: 3'- cuCCCUUGCU--CUu--ACCGCGCCCCa---UG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 142988 | 0.73 | 0.518187 |
Target: 5'- -cGGGcAUGAGGcgGGCGUGGGG-ACc -3' miRNA: 3'- cuCCCuUGCUCUuaCCGCGCCCCaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 47383 | 0.75 | 0.407745 |
Target: 5'- -uGGcGAuaauaaGCGAGAGUGGCGCGugguuGGGUGCg -3' miRNA: 3'- cuCC-CU------UGCUCUUACCGCGC-----CCCAUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 6972 | 0.75 | 0.407745 |
Target: 5'- aAGuGAugAUGAGAGUGGCGCGGGGUu- -3' miRNA: 3'- cUCcCU--UGCUCUUACCGCGCCCCAug -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 19414 | 0.76 | 0.374319 |
Target: 5'- uGGGGGAgGCGAGGcgccggguGUGGcCGCGGGGcGCg -3' miRNA: 3'- -CUCCCU-UGCUCU--------UACC-GCGCCCCaUG- -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 155243 | 0.79 | 0.268767 |
Target: 5'- cGGGGGAUGAGGAagcaucuccgcagcGGCGCGGGGUAg -3' miRNA: 3'- cUCCCUUGCUCUUa-------------CCGCGCCCCAUg -5' |
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24736 | 5' | -56.5 | NC_005264.1 | + | 88231 | 0.81 | 0.189512 |
Target: 5'- aGGGGGAACGuGGggUcaGGCGCGGGGUc- -3' miRNA: 3'- -CUCCCUUGC-UCuuA--CCGCGCCCCAug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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