miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 13456 0.67 0.995111
Target:  5'- cGGCGCcgaaggggcuccuGCGggGACUCgg-GGGacagcUCGGg -3'
miRNA:   3'- -CCGCG-------------UGCuuCUGAGauaUUC-----AGCCg -5'
24737 5' -49.7 NC_005264.1 + 150635 0.67 0.997483
Target:  5'- cGGgGCugGucGACUCUGgcuacacGGGacuucUCGGCu -3'
miRNA:   3'- -CCgCGugCuuCUGAGAUa------UUC-----AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 111260 0.67 0.997483
Target:  5'- uGCGCGgGAA-ACUCgauc-GUCGGCa -3'
miRNA:   3'- cCGCGUgCUUcUGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 159677 0.68 0.99018
Target:  5'- cGCGCGCGGAGGgUCgccguuUCGGUu -3'
miRNA:   3'- cCGCGUGCUUCUgAGauauucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 162427 0.68 0.99018
Target:  5'- aGGgGCGCGAAGccuacguCUCUGguAGUCcGCa -3'
miRNA:   3'- -CCgCGUGCUUCu------GAGAUauUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 58768 0.68 0.99018
Target:  5'- aGGCGCACGc--GCggu---GGUCGGCg -3'
miRNA:   3'- -CCGCGUGCuucUGagauauUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 88817 0.68 0.993518
Target:  5'- gGGCGUGCaGAGAUUCUcuc--UCGGCg -3'
miRNA:   3'- -CCGCGUGcUUCUGAGAuauucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 43400 0.68 0.99018
Target:  5'- aGGgGCGCGAAGccuacguCUCUGguAGUCcGCa -3'
miRNA:   3'- -CCgCGUGCUUCu------GAGAUauUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 43897 0.68 0.992525
Target:  5'- gGGCGC-CGGAGACg--AUAGcgCGGCc -3'
miRNA:   3'- -CCGCGuGCUUCUGagaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 109375 0.68 0.994402
Target:  5'- uGUGCGCGuuGcGC-CUAgucAAGUCGGCg -3'
miRNA:   3'- cCGCGUGCuuC-UGaGAUa--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 48141 0.68 0.994233
Target:  5'- aGGCGCACGA-GACcgCgcaauccuGcUCGGCg -3'
miRNA:   3'- -CCGCGUGCUuCUGa-Gauauu---C-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 50158 0.68 0.994402
Target:  5'- uGGCGCACGAGGGCgugccgCaAUAcuccgUGGCc -3'
miRNA:   3'- -CCGCGUGCUUCUGa-----GaUAUuca--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 106427 0.68 0.994402
Target:  5'- gGGCuCACGAAGAUcCUGcacGAG-CGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGaGAUa--UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 162663 0.68 0.992525
Target:  5'- aGCGCGcCGgcGGgUCguagGUGuacGGUCGGCg -3'
miRNA:   3'- cCGCGU-GCuuCUgAGa---UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 63014 0.68 0.993518
Target:  5'- uGGCGCACuccAGcCUUaccccgGGGUCGGCg -3'
miRNA:   3'- -CCGCGUGcu-UCuGAGaua---UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 24882 0.68 0.99018
Target:  5'- gGGCgGCACGAGGcuucGCUCUucGUAuAGUCGcGUc -3'
miRNA:   3'- -CCG-CGUGCUUC----UGAGA--UAU-UCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 4328 0.69 0.983793
Target:  5'- aGGUGCGCGAaaGGuaGCUUaucgcgAUAgauAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCU--UC--UGAGa-----UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 3379 0.69 0.987918
Target:  5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3'
miRNA:   3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 104860 0.69 0.983793
Target:  5'- cGGCcgccGCGCGggGACUCcgAUGAcgauaGGCa -3'
miRNA:   3'- -CCG----CGUGCuuCUGAGa-UAUUcag--CCG- -5'
24737 5' -49.7 NC_005264.1 + 160006 0.69 0.988664
Target:  5'- aGGCGUGCGAcgAGACUCUcaccuggAUGcugUGGCa -3'
miRNA:   3'- -CCGCGUGCU--UCUGAGA-------UAUucaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.