miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 54703 0.7 0.979606
Target:  5'- cGGCGC-CGAGGACaggGUGGGaagcgUGGCg -3'
miRNA:   3'- -CCGCGuGCUUCUGagaUAUUCa----GCCG- -5'
24737 5' -49.7 NC_005264.1 + 55178 0.67 0.995878
Target:  5'- gGGCGCGgcUGAAGGCggcgaccgCgaaacGUCGGCg -3'
miRNA:   3'- -CCGCGU--GCUUCUGa-------GauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 56136 0.73 0.914578
Target:  5'- aGGCGCGCG-AGugUCgc---GUUGGCc -3'
miRNA:   3'- -CCGCGUGCuUCugAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 56827 0.75 0.85051
Target:  5'- cGGCGCAUGAuca-UCguuUGAGUCGGUa -3'
miRNA:   3'- -CCGCGUGCUucugAGau-AUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 58037 0.69 0.987293
Target:  5'- cGGCGCccgcucgucucGCGAaagaggAGACUCgcguGGUgGGCa -3'
miRNA:   3'- -CCGCG-----------UGCU------UCUGAGauauUCAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 58686 0.71 0.950563
Target:  5'- aGGCGCACccGGcCUCUAUGA--CGGCc -3'
miRNA:   3'- -CCGCGUGcuUCuGAGAUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 58768 0.68 0.99018
Target:  5'- aGGCGCACGc--GCggu---GGUCGGCg -3'
miRNA:   3'- -CCGCGUGCuucUGagauauUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 59724 0.71 0.950563
Target:  5'- cGGCGCGCauggcucguuaGAAGAgUC-AUGGGgCGGCg -3'
miRNA:   3'- -CCGCGUG-----------CUUCUgAGaUAUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 63014 0.68 0.993518
Target:  5'- uGGCGCACuccAGcCUUaccccgGGGUCGGCg -3'
miRNA:   3'- -CCGCGUGcu-UCuGAGaua---UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 66558 0.74 0.881344
Target:  5'- aGGCGCACGAGcGCgUCUAcgaugGAGUCauGGCu -3'
miRNA:   3'- -CCGCGUGCUUcUG-AGAUa----UUCAG--CCG- -5'
24737 5' -49.7 NC_005264.1 + 74895 0.66 0.998736
Target:  5'- cGGCGCACc---ACUUguuagccauGGUCGGCg -3'
miRNA:   3'- -CCGCGUGcuucUGAGauau-----UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 76004 0.71 0.950563
Target:  5'- uGGCGCccccuaGAAGA-UCUG-AAGUCGGCc -3'
miRNA:   3'- -CCGCGug----CUUCUgAGAUaUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 76302 0.66 0.997848
Target:  5'- gGGCGCGgGggGGCUgcuggcucauucgCUGUAuaguaaAGUCcaugGGCg -3'
miRNA:   3'- -CCGCGUgCuuCUGA-------------GAUAU------UCAG----CCG- -5'
24737 5' -49.7 NC_005264.1 + 81906 0.66 0.998232
Target:  5'- gGGCGgGCGAgccagcAGAacgaUCgucgcguAGUCGGCg -3'
miRNA:   3'- -CCGCgUGCU------UCUg---AGauau---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 82945 0.67 0.995878
Target:  5'- cGCGCACGcaAAGACcaggccUGAGcCGGCg -3'
miRNA:   3'- cCGCGUGC--UUCUGagau--AUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 84814 0.66 0.998784
Target:  5'- uGGCGCACGGAGcgaaGCUCgcc--GUCauGCa -3'
miRNA:   3'- -CCGCGUGCUUC----UGAGauauuCAGc-CG- -5'
24737 5' -49.7 NC_005264.1 + 87528 0.69 0.985624
Target:  5'- uGGCGCGCGGcAGAUgCUGcAGcGUgGGCg -3'
miRNA:   3'- -CCGCGUGCU-UCUGaGAUaUU-CAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 88817 0.68 0.993518
Target:  5'- gGGCGUGCaGAGAUUCUcuc--UCGGCg -3'
miRNA:   3'- -CCGCGUGcUUCUGAGAuauucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 90651 0.74 0.873975
Target:  5'- gGGCGCGCGGAGACcgcauugCUGg----CGGCu -3'
miRNA:   3'- -CCGCGUGCUUCUGa------GAUauucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 95340 0.75 0.842259
Target:  5'- gGGCGcCGCGAaacGGACUCggcgGGG-CGGCg -3'
miRNA:   3'- -CCGC-GUGCU---UCUGAGaua-UUCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.