miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 95740 0.69 0.983793
Target:  5'- gGGCGCugG-AGACggccaugggggaUCUGUAcG-CGGCg -3'
miRNA:   3'- -CCGCGugCuUCUG------------AGAUAUuCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 96899 0.73 0.920478
Target:  5'- cGGCGCGCGAGGGCg--------CGGCa -3'
miRNA:   3'- -CCGCGUGCUUCUGagauauucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 99040 0.69 0.983793
Target:  5'- aGCGCaaaGCGggGcCUCccccGAGUCGGUg -3'
miRNA:   3'- cCGCG---UGCuuCuGAGaua-UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 101930 0.7 0.979606
Target:  5'- uGGCGCGCGAAacuGGCggc----GUCGGCc -3'
miRNA:   3'- -CCGCGUGCUU---CUGagauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 104640 0.66 0.997885
Target:  5'- cGCGCGCGggGAacaCUAaaauaGAGagGGCu -3'
miRNA:   3'- cCGCGUGCuuCUga-GAUa----UUCagCCG- -5'
24737 5' -49.7 NC_005264.1 + 104860 0.69 0.983793
Target:  5'- cGGCcgccGCGCGggGACUCcgAUGAcgauaGGCa -3'
miRNA:   3'- -CCG----CGUGCuuCUGAGa-UAUUcag--CCG- -5'
24737 5' -49.7 NC_005264.1 + 105133 0.67 0.995186
Target:  5'- cGGCGCcaACGAAGcGCUgUAUGccgcGGUCGaGUu -3'
miRNA:   3'- -CCGCG--UGCUUC-UGAgAUAU----UCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 106427 0.68 0.994402
Target:  5'- gGGCuCACGAAGAUcCUGcacGAG-CGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGaGAUa--UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 108802 0.67 0.996486
Target:  5'- uGCGCACGucGGCaagauauguggUCUucAAGUCGcGCa -3'
miRNA:   3'- cCGCGUGCuuCUG-----------AGAuaUUCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 109351 0.76 0.778335
Target:  5'- cGGCGCAUGggGcUUCUAUgguggggGAGuUCGGCc -3'
miRNA:   3'- -CCGCGUGCuuCuGAGAUA-------UUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 109375 0.68 0.994402
Target:  5'- uGUGCGCGuuGcGC-CUAgucAAGUCGGCg -3'
miRNA:   3'- cCGCGUGCuuC-UGaGAUa--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 111260 0.67 0.997483
Target:  5'- uGCGCGgGAA-ACUCgauc-GUCGGCa -3'
miRNA:   3'- cCGCGUgCUUcUGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 116980 0.73 0.920478
Target:  5'- uGGCgGCGCGcAGACUCg--AAGUCuugggGGCg -3'
miRNA:   3'- -CCG-CGUGCuUCUGAGauaUUCAG-----CCG- -5'
24737 5' -49.7 NC_005264.1 + 118972 0.67 0.997483
Target:  5'- cGGCGacgACGAAGACgUCUuu--GcCGGCc -3'
miRNA:   3'- -CCGCg--UGCUUCUG-AGAuauuCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 119022 0.67 0.996253
Target:  5'- uGGC-UACGGAGAUUCUGUucugcugacgCGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGAGAUAuuca------GCCG- -5'
24737 5' -49.7 NC_005264.1 + 120074 0.66 0.99853
Target:  5'- uGGCGgACGccGGCUagcggGAGUCGuGCc -3'
miRNA:   3'- -CCGCgUGCuuCUGAgaua-UUCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 122406 0.69 0.987918
Target:  5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3'
miRNA:   3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 124441 0.67 0.995186
Target:  5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3'
miRNA:   3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 125946 0.69 0.988809
Target:  5'- -uUGCGCGaAAGACUCgaacGGcUCGGCg -3'
miRNA:   3'- ccGCGUGC-UUCUGAGauauUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 126271 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.