miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 130990 0.73 0.920478
Target:  5'- aGGCGCugGAAGAUUUcaggGGGUC-GCa -3'
miRNA:   3'- -CCGCGugCUUCUGAGaua-UUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 131681 0.67 0.995878
Target:  5'- uGGCgGCACGucGGCUCgcaagcGUAGcGUgGGCc -3'
miRNA:   3'- -CCG-CGUGCuuCUGAGa-----UAUU-CAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 132369 0.66 0.998784
Target:  5'- aGGgGCGCGAGGAUgaac---GUCGGg -3'
miRNA:   3'- -CCgCGUGCUUCUGagauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 132483 0.67 0.995111
Target:  5'- cGGCGCcgaaggggcuccuGCGggGACUCgg-GGGacagcUCGGg -3'
miRNA:   3'- -CCGCG-------------UGCuuCUGAGauaUUC-----AGCCg -5'
24737 5' -49.7 NC_005264.1 + 136244 0.66 0.997885
Target:  5'- uGGCG-ACGGAcacGGCUC-AUGGGUuagCGGCg -3'
miRNA:   3'- -CCGCgUGCUU---CUGAGaUAUUCA---GCCG- -5'
24737 5' -49.7 NC_005264.1 + 137498 0.7 0.979606
Target:  5'- cGCGUucAUGAAGuCUCUGgGGGcCGGCa -3'
miRNA:   3'- cCGCG--UGCUUCuGAGAUaUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 138607 0.71 0.964353
Target:  5'- cGGCGC-CGGAGugUCUuacuauccCGGCg -3'
miRNA:   3'- -CCGCGuGCUUCugAGAuauuca--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 142257 0.67 0.996486
Target:  5'- aGGCGC-CGAAGuuaUCgcgaGGGUCGGa -3'
miRNA:   3'- -CCGCGuGCUUCug-AGaua-UUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 143863 1.16 0.004868
Target:  5'- aGGCGCACGAAGACUCUAUAAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCUUCUGAGAUAUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 145621 0.69 0.981789
Target:  5'- aGGCGCGCaGGAGGaacCUG-GAGUCGGa -3'
miRNA:   3'- -CCGCGUG-CUUCUga-GAUaUUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 149854 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 150635 0.67 0.997483
Target:  5'- cGGgGCugGucGACUCUGgcuacacGGGacuucUCGGCu -3'
miRNA:   3'- -CCgCGugCuuCUGAGAUa------UUC-----AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 150857 0.72 0.926125
Target:  5'- gGGCG-ACGAAGAC-CUGcUAGGUaaCGGCu -3'
miRNA:   3'- -CCGCgUGCUUCUGaGAU-AUUCA--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 152834 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 153353 0.7 0.974664
Target:  5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3'
miRNA:   3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 155964 0.66 0.99853
Target:  5'- cGGCuCGCGGAcGCUCUGgcugccGUCGGg -3'
miRNA:   3'- -CCGcGUGCUUcUGAGAUauu---CAGCCg -5'
24737 5' -49.7 NC_005264.1 + 159677 0.68 0.99018
Target:  5'- cGCGCGCGGAGGgUCgccguuUCGGUu -3'
miRNA:   3'- cCGCGUGCUUCUgAGauauucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 159860 0.67 0.995878
Target:  5'- cGGCGCuCGcauGGAUUCgu--GGUCGGa -3'
miRNA:   3'- -CCGCGuGCu--UCUGAGauauUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 160006 0.69 0.988664
Target:  5'- aGGCGUGCGAcgAGACUCUcaccuggAUGcugUGGCa -3'
miRNA:   3'- -CCGCGUGCU--UCUGAGA-------UAUucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 160268 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.