Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 132483 | 0.67 | 0.995111 |
Target: 5'- cGGCGCcgaaggggcuccuGCGggGACUCgg-GGGacagcUCGGg -3' miRNA: 3'- -CCGCG-------------UGCuuCUGAGauaUUC-----AGCCg -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 132369 | 0.66 | 0.998784 |
Target: 5'- aGGgGCGCGAGGAUgaac---GUCGGg -3' miRNA: 3'- -CCgCGUGCUUCUGagauauuCAGCCg -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 131681 | 0.67 | 0.995878 |
Target: 5'- uGGCgGCACGucGGCUCgcaagcGUAGcGUgGGCc -3' miRNA: 3'- -CCG-CGUGCuuCUGAGa-----UAUU-CAgCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 130990 | 0.73 | 0.920478 |
Target: 5'- aGGCGCugGAAGAUUUcaggGGGUC-GCa -3' miRNA: 3'- -CCGCGugCUUCUGAGaua-UUCAGcCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 126271 | 0.84 | 0.398383 |
Target: 5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3' miRNA: 3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 125946 | 0.69 | 0.988809 |
Target: 5'- -uUGCGCGaAAGACUCgaacGGcUCGGCg -3' miRNA: 3'- ccGCGUGC-UUCUGAGauauUC-AGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 124441 | 0.67 | 0.995186 |
Target: 5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3' miRNA: 3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 122406 | 0.69 | 0.987918 |
Target: 5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3' miRNA: 3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 120074 | 0.66 | 0.99853 |
Target: 5'- uGGCGgACGccGGCUagcggGAGUCGuGCc -3' miRNA: 3'- -CCGCgUGCuuCUGAgaua-UUCAGC-CG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 119022 | 0.67 | 0.996253 |
Target: 5'- uGGC-UACGGAGAUUCUGUucugcugacgCGGCu -3' miRNA: 3'- -CCGcGUGCUUCUGAGAUAuuca------GCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 118972 | 0.67 | 0.997483 |
Target: 5'- cGGCGacgACGAAGACgUCUuu--GcCGGCc -3' miRNA: 3'- -CCGCg--UGCUUCUG-AGAuauuCaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 116980 | 0.73 | 0.920478 |
Target: 5'- uGGCgGCGCGcAGACUCg--AAGUCuugggGGCg -3' miRNA: 3'- -CCG-CGUGCuUCUGAGauaUUCAG-----CCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 111260 | 0.67 | 0.997483 |
Target: 5'- uGCGCGgGAA-ACUCgauc-GUCGGCa -3' miRNA: 3'- cCGCGUgCUUcUGAGauauuCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 109375 | 0.68 | 0.994402 |
Target: 5'- uGUGCGCGuuGcGC-CUAgucAAGUCGGCg -3' miRNA: 3'- cCGCGUGCuuC-UGaGAUa--UUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 109351 | 0.76 | 0.778335 |
Target: 5'- cGGCGCAUGggGcUUCUAUgguggggGAGuUCGGCc -3' miRNA: 3'- -CCGCGUGCuuCuGAGAUA-------UUC-AGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 108802 | 0.67 | 0.996486 |
Target: 5'- uGCGCACGucGGCaagauauguggUCUucAAGUCGcGCa -3' miRNA: 3'- cCGCGUGCuuCUG-----------AGAuaUUCAGC-CG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 106427 | 0.68 | 0.994402 |
Target: 5'- gGGCuCACGAAGAUcCUGcacGAG-CGGCu -3' miRNA: 3'- -CCGcGUGCUUCUGaGAUa--UUCaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 105133 | 0.67 | 0.995186 |
Target: 5'- cGGCGCcaACGAAGcGCUgUAUGccgcGGUCGaGUu -3' miRNA: 3'- -CCGCG--UGCUUC-UGAgAUAU----UCAGC-CG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 104860 | 0.69 | 0.983793 |
Target: 5'- cGGCcgccGCGCGggGACUCcgAUGAcgauaGGCa -3' miRNA: 3'- -CCG----CGUGCuuCUGAGa-UAUUcag--CCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 104640 | 0.66 | 0.997885 |
Target: 5'- cGCGCGCGggGAacaCUAaaauaGAGagGGCu -3' miRNA: 3'- cCGCGUGCuuCUga-GAUa----UUCagCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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