miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 116980 0.73 0.920478
Target:  5'- uGGCgGCGCGcAGACUCg--AAGUCuugggGGCg -3'
miRNA:   3'- -CCG-CGUGCuUCUGAGauaUUCAG-----CCG- -5'
24737 5' -49.7 NC_005264.1 + 9608 0.71 0.954704
Target:  5'- uGCGC-CGAAGGCUCcGUAAcgUGGCu -3'
miRNA:   3'- cCGCGuGCUUCUGAGaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 149854 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 16767 0.66 0.998784
Target:  5'- -cCGCGCGggGGCgcgCUGUucGGGcCGGa -3'
miRNA:   3'- ccGCGUGCuuCUGa--GAUA--UUCaGCCg -5'
24737 5' -49.7 NC_005264.1 + 45776 0.66 0.998232
Target:  5'- gGGCGCGCGGAGuggg---GAGUCGa- -3'
miRNA:   3'- -CCGCGUGCUUCugagauaUUCAGCcg -5'
24737 5' -49.7 NC_005264.1 + 160268 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 55178 0.67 0.995878
Target:  5'- gGGCGCGgcUGAAGGCggcgaccgCgaaacGUCGGCg -3'
miRNA:   3'- -CCGCGU--GCUUCUGa-------GauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 28684 0.67 0.995186
Target:  5'- uGGCGCGcCGAgcuacAGAUUCUGUuGGgcgUGGUc -3'
miRNA:   3'- -CCGCGU-GCU-----UCUGAGAUAuUCa--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 106427 0.68 0.994402
Target:  5'- gGGCuCACGAAGAUcCUGcacGAG-CGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGaGAUa--UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 58037 0.69 0.987293
Target:  5'- cGGCGCccgcucgucucGCGAaagaggAGACUCgcguGGUgGGCa -3'
miRNA:   3'- -CCGCG-----------UGCU------UCUGAGauauUCAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 6920 0.69 0.988809
Target:  5'- -uUGCGCGaAAGACUCgaacGGcUCGGCg -3'
miRNA:   3'- ccGCGUGC-UUCUGAGauauUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 81906 0.66 0.998232
Target:  5'- gGGCGgGCGAgccagcAGAacgaUCgucgcguAGUCGGCg -3'
miRNA:   3'- -CCGCgUGCU------UCUg---AGauau---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 109351 0.76 0.778335
Target:  5'- cGGCGCAUGggGcUUCUAUgguggggGAGuUCGGCc -3'
miRNA:   3'- -CCGCGUGCuuCuGAGAUA-------UUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 33808 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 41241 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 30828 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 104860 0.69 0.983793
Target:  5'- cGGCcgccGCGCGggGACUCcgAUGAcgauaGGCa -3'
miRNA:   3'- -CCG----CGUGCuuCUGAGa-UAUUcag--CCG- -5'
24737 5' -49.7 NC_005264.1 + 22324 0.69 0.988809
Target:  5'- uGGCGCGCGggG-Ca--AUGGGUCugGGCu -3'
miRNA:   3'- -CCGCGUGCuuCuGagaUAUUCAG--CCG- -5'
24737 5' -49.7 NC_005264.1 + 3379 0.69 0.987918
Target:  5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3'
miRNA:   3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 160006 0.69 0.988664
Target:  5'- aGGCGUGCGAcgAGACUCUcaccuggAUGcugUGGCa -3'
miRNA:   3'- -CCGCGUGCU--UCUGAGA-------UAUucaGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.