miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 43759 0.67 0.995473
Target:  5'- aGCGUgggggagaacaguuuACGGAGACUCgccGUGGGUgCGGg -3'
miRNA:   3'- cCGCG---------------UGCUUCUGAGa--UAUUCA-GCCg -5'
24737 5' -49.7 NC_005264.1 + 96899 0.73 0.920478
Target:  5'- cGGCGCGCGAGGGCg--------CGGCa -3'
miRNA:   3'- -CCGCGUGCUUCUGagauauucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 26156 0.72 0.925016
Target:  5'- aGGcCGCgGCGAGGACUUUcgcggcacuGUCGGCg -3'
miRNA:   3'- -CC-GCG-UGCUUCUGAGAuauu-----CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 150857 0.72 0.926125
Target:  5'- gGGCG-ACGAAGAC-CUGcUAGGUaaCGGCu -3'
miRNA:   3'- -CCGCgUGCUUCUGaGAU-AUUCA--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 18573 0.72 0.946177
Target:  5'- cGCgGCACGGAGaACUCggu--GUCGGUg -3'
miRNA:   3'- cCG-CGUGCUUC-UGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 58686 0.71 0.950563
Target:  5'- aGGCGCACccGGcCUCUAUGA--CGGCc -3'
miRNA:   3'- -CCGCGUGcuUCuGAGAUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 22324 0.69 0.988809
Target:  5'- uGGCGCGCGggG-Ca--AUGGGUCugGGCu -3'
miRNA:   3'- -CCGCGUGCuuCuGagaUAUUCAG--CCG- -5'
24737 5' -49.7 NC_005264.1 + 6920 0.69 0.988809
Target:  5'- -uUGCGCGaAAGACUCgaacGGcUCGGCg -3'
miRNA:   3'- ccGCGUGC-UUCUGAGauauUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 160006 0.69 0.988664
Target:  5'- aGGCGUGCGAcgAGACUCUcaccuggAUGcugUGGCa -3'
miRNA:   3'- -CCGCGUGCU--UCUGAGA-------UAUucaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 130990 0.73 0.920478
Target:  5'- aGGCGCugGAAGAUUUcaggGGGUC-GCa -3'
miRNA:   3'- -CCGCGugCUUCUGAGaua-UUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 56136 0.73 0.914578
Target:  5'- aGGCGCGCG-AGugUCgc---GUUGGCc -3'
miRNA:   3'- -CCGCGUGCuUCugAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 66558 0.74 0.881344
Target:  5'- aGGCGCACGAGcGCgUCUAcgaugGAGUCauGGCu -3'
miRNA:   3'- -CCGCGUGCUUcUG-AGAUa----UUCAG--CCG- -5'
24737 5' -49.7 NC_005264.1 + 5414 0.67 0.995186
Target:  5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3'
miRNA:   3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 13456 0.67 0.995111
Target:  5'- cGGCGCcgaaggggcuccuGCGggGACUCgg-GGGacagcUCGGg -3'
miRNA:   3'- -CCGCG-------------UGCuuCUGAGauaUUC-----AGCCg -5'
24737 5' -49.7 NC_005264.1 + 43897 0.68 0.992525
Target:  5'- gGGCGC-CGGAGACg--AUAGcgCGGCc -3'
miRNA:   3'- -CCGCGuGCUUCUGagaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 43400 0.68 0.99018
Target:  5'- aGGgGCGCGAAGccuacguCUCUGguAGUCcGCa -3'
miRNA:   3'- -CCgCGUGCUUCu------GAGAUauUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 7244 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 33808 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 95340 0.75 0.842259
Target:  5'- gGGCGcCGCGAaacGGACUCggcgGGG-CGGCg -3'
miRNA:   3'- -CCGC-GUGCU---UCUGAGaua-UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 90651 0.74 0.873975
Target:  5'- gGGCGCGCGGAGACcgcauugCUGg----CGGCu -3'
miRNA:   3'- -CCGCGUGCUUCUGa------GAUauucaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.