Results 81 - 100 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 26156 | 0.72 | 0.925016 |
Target: 5'- aGGcCGCgGCGAGGACUUUcgcggcacuGUCGGCg -3' miRNA: 3'- -CC-GCG-UGCUUCUGAGAuauu-----CAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 96899 | 0.73 | 0.920478 |
Target: 5'- cGGCGCGCGAGGGCg--------CGGCa -3' miRNA: 3'- -CCGCGUGCUUCUGagauauucaGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 130990 | 0.73 | 0.920478 |
Target: 5'- aGGCGCugGAAGAUUUcaggGGGUC-GCa -3' miRNA: 3'- -CCGCGugCUUCUGAGaua-UUCAGcCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 56136 | 0.73 | 0.914578 |
Target: 5'- aGGCGCGCG-AGugUCgc---GUUGGCc -3' miRNA: 3'- -CCGCGUGCuUCugAGauauuCAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 66558 | 0.74 | 0.881344 |
Target: 5'- aGGCGCACGAGcGCgUCUAcgaugGAGUCauGGCu -3' miRNA: 3'- -CCGCGUGCUUcUG-AGAUa----UUCAG--CCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 90651 | 0.74 | 0.873975 |
Target: 5'- gGGCGCGCGGAGACcgcauugCUGg----CGGCu -3' miRNA: 3'- -CCGCGUGCUUCUGa------GAUauucaGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 95340 | 0.75 | 0.842259 |
Target: 5'- gGGCGcCGCGAaacGGACUCggcgGGG-CGGCg -3' miRNA: 3'- -CCGC-GUGCU---UCUGAGaua-UUCaGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 33808 | 0.76 | 0.783106 |
Target: 5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3' miRNA: 3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 58686 | 0.71 | 0.950563 |
Target: 5'- aGGCGCACccGGcCUCUAUGA--CGGCc -3' miRNA: 3'- -CCGCGUGcuUCuGAGAUAUUcaGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 76004 | 0.71 | 0.950563 |
Target: 5'- uGGCGCccccuaGAAGA-UCUG-AAGUCGGCc -3' miRNA: 3'- -CCGCGug----CUUCUgAGAUaUUCAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 3379 | 0.69 | 0.987918 |
Target: 5'- gGGCG-GCGAGGGCUUcuccggaacgcgGGGUCGGUg -3' miRNA: 3'- -CCGCgUGCUUCUGAGaua---------UUCAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 104860 | 0.69 | 0.983793 |
Target: 5'- cGGCcgccGCGCGggGACUCcgAUGAcgauaGGCa -3' miRNA: 3'- -CCG----CGUGCuuCUGAGa-UAUUcag--CCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 95740 | 0.69 | 0.983793 |
Target: 5'- gGGCGCugG-AGACggccaugggggaUCUGUAcG-CGGCg -3' miRNA: 3'- -CCGCGugCuUCUG------------AGAUAUuCaGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 145621 | 0.69 | 0.981789 |
Target: 5'- aGGCGCGCaGGAGGaacCUG-GAGUCGGa -3' miRNA: 3'- -CCGCGUG-CUUCUga-GAUaUUCAGCCg -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 101930 | 0.7 | 0.979606 |
Target: 5'- uGGCGCGCGAAacuGGCggc----GUCGGCc -3' miRNA: 3'- -CCGCGUGCUU---CUGagauauuCAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 54703 | 0.7 | 0.979606 |
Target: 5'- cGGCGC-CGAGGACaggGUGGGaagcgUGGCg -3' miRNA: 3'- -CCGCGuGCUUCUGagaUAUUCa----GCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 161466 | 0.7 | 0.977234 |
Target: 5'- cGCGCGC-AGGAUgcaUCguaccUAGGUCGGCg -3' miRNA: 3'- cCGCGUGcUUCUG---AGau---AUUCAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 34326 | 0.7 | 0.974664 |
Target: 5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3' miRNA: 3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 138607 | 0.71 | 0.964353 |
Target: 5'- cGGCGC-CGGAGugUCUuacuauccCGGCg -3' miRNA: 3'- -CCGCGuGCUUCugAGAuauuca--GCCG- -5' |
|||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 59724 | 0.71 | 0.950563 |
Target: 5'- cGGCGCGCauggcucguuaGAAGAgUC-AUGGGgCGGCg -3' miRNA: 3'- -CCGCGUG-----------CUUCUgAGaUAUUCaGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home