miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 131681 0.67 0.995878
Target:  5'- uGGCgGCACGucGGCUCgcaagcGUAGcGUgGGCc -3'
miRNA:   3'- -CCG-CGUGCuuCUGAGa-----UAUU-CAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 159860 0.67 0.995878
Target:  5'- cGGCGCuCGcauGGAUUCgu--GGUCGGa -3'
miRNA:   3'- -CCGCGuGCu--UCUGAGauauUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 16846 0.66 0.997885
Target:  5'- cGCGCACGccguaGAGGCcCUcguUGAccuuGUCGGCg -3'
miRNA:   3'- cCGCGUGC-----UUCUGaGAu--AUU----CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 104640 0.66 0.997885
Target:  5'- cGCGCGCGggGAacaCUAaaauaGAGagGGCu -3'
miRNA:   3'- cCGCGUGCuuCUga-GAUa----UUCagCCG- -5'
24737 5' -49.7 NC_005264.1 + 81906 0.66 0.998232
Target:  5'- gGGCGgGCGAgccagcAGAacgaUCgucgcguAGUCGGCg -3'
miRNA:   3'- -CCGCgUGCU------UCUg---AGauau---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 120074 0.66 0.99853
Target:  5'- uGGCGgACGccGGCUagcggGAGUCGuGCc -3'
miRNA:   3'- -CCGCgUGCuuCUGAgaua-UUCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 155964 0.66 0.99853
Target:  5'- cGGCuCGCGGAcGCUCUGgcugccGUCGGg -3'
miRNA:   3'- -CCGcGUGCUUcUGAGAUauu---CAGCCg -5'
24737 5' -49.7 NC_005264.1 + 13342 0.66 0.998784
Target:  5'- aGGgGCGCGAGGAUgaac---GUCGGg -3'
miRNA:   3'- -CCgCGUGCUUCUGagauauuCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 84814 0.66 0.998784
Target:  5'- uGGCGCACGGAGcgaaGCUCgcc--GUCauGCa -3'
miRNA:   3'- -CCGCGUGCUUC----UGAGauauuCAGc-CG- -5'
24737 5' -49.7 NC_005264.1 + 27758 0.66 0.998784
Target:  5'- gGGUGC-CGAucACUCUGUAc-UUGGCg -3'
miRNA:   3'- -CCGCGuGCUucUGAGAUAUucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 76302 0.66 0.997848
Target:  5'- gGGCGCGgGggGGCUgcuggcucauucgCUGUAuaguaaAGUCcaugGGCg -3'
miRNA:   3'- -CCGCGUgCuuCUGA-------------GAUAU------UCAG----CCG- -5'
24737 5' -49.7 NC_005264.1 + 150635 0.67 0.997483
Target:  5'- cGGgGCugGucGACUCUGgcuacacGGGacuucUCGGCu -3'
miRNA:   3'- -CCgCGugCuuCUGAGAUa------UUC-----AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 82945 0.67 0.995878
Target:  5'- cGCGCACGcaAAGACcaggccUGAGcCGGCg -3'
miRNA:   3'- cCGCGUGC--UUCUGagau--AUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 119022 0.67 0.996253
Target:  5'- uGGC-UACGGAGAUUCUGUucugcugacgCGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGAGAUAuuca------GCCG- -5'
24737 5' -49.7 NC_005264.1 + 43638 0.67 0.996486
Target:  5'- cGCGCcgGCGAGGuCguagGUGuacGGUCGGCg -3'
miRNA:   3'- cCGCG--UGCUUCuGaga-UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 142257 0.67 0.996486
Target:  5'- aGGCGC-CGAAGuuaUCgcgaGGGUCGGa -3'
miRNA:   3'- -CCGCGuGCUUCug-AGaua-UUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 30828 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 41241 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 111260 0.67 0.997483
Target:  5'- uGCGCGgGAA-ACUCgauc-GUCGGCa -3'
miRNA:   3'- cCGCGUgCUUcUGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 118972 0.67 0.997483
Target:  5'- cGGCGacgACGAAGACgUCUuu--GcCGGCc -3'
miRNA:   3'- -CCGCg--UGCUUCUG-AGAuauuCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.