miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 111260 0.67 0.997483
Target:  5'- uGCGCGgGAA-ACUCgauc-GUCGGCa -3'
miRNA:   3'- cCGCGUgCUUcUGAGauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 41241 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 43400 0.68 0.99018
Target:  5'- aGGgGCGCGAAGccuacguCUCUGguAGUCcGCa -3'
miRNA:   3'- -CCgCGUGCUUCu------GAGAUauUCAGcCG- -5'
24737 5' -49.7 NC_005264.1 + 43897 0.68 0.992525
Target:  5'- gGGCGC-CGGAGACg--AUAGcgCGGCc -3'
miRNA:   3'- -CCGCGuGCUUCUGagaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 13456 0.67 0.995111
Target:  5'- cGGCGCcgaaggggcuccuGCGggGACUCgg-GGGacagcUCGGg -3'
miRNA:   3'- -CCGCG-------------UGCuuCUGAGauaUUC-----AGCCg -5'
24737 5' -49.7 NC_005264.1 + 5414 0.67 0.995186
Target:  5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3'
miRNA:   3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 43759 0.67 0.995473
Target:  5'- aGCGUgggggagaacaguuuACGGAGACUCgccGUGGGUgCGGg -3'
miRNA:   3'- cCGCG---------------UGCUUCUGAGa--UAUUCA-GCCg -5'
24737 5' -49.7 NC_005264.1 + 131681 0.67 0.995878
Target:  5'- uGGCgGCACGucGGCUCgcaagcGUAGcGUgGGCc -3'
miRNA:   3'- -CCG-CGUGCuuCUGAGa-----UAUU-CAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 159860 0.67 0.995878
Target:  5'- cGGCGCuCGcauGGAUUCgu--GGUCGGa -3'
miRNA:   3'- -CCGCGuGCu--UCUGAGauauUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 82945 0.67 0.995878
Target:  5'- cGCGCACGcaAAGACcaggccUGAGcCGGCg -3'
miRNA:   3'- cCGCGUGC--UUCUGagau--AUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 119022 0.67 0.996253
Target:  5'- uGGC-UACGGAGAUUCUGUucugcugacgCGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGAGAUAuuca------GCCG- -5'
24737 5' -49.7 NC_005264.1 + 43638 0.67 0.996486
Target:  5'- cGCGCcgGCGAGGuCguagGUGuacGGUCGGCg -3'
miRNA:   3'- cCGCG--UGCUUCuGaga-UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 142257 0.67 0.996486
Target:  5'- aGGCGC-CGAAGuuaUCgcgaGGGUCGGa -3'
miRNA:   3'- -CCGCGuGCUUCug-AGaua-UUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 30828 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 56827 0.75 0.85051
Target:  5'- cGGCGCAUGAuca-UCguuUGAGUCGGUa -3'
miRNA:   3'- -CCGCGUGCUucugAGau-AUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 21254 0.75 0.85051
Target:  5'- gGGCGCACGAGcuGAC-C-AUAGG-CGGCa -3'
miRNA:   3'- -CCGCGUGCUU--CUGaGaUAUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 152834 0.76 0.783106
Target:  5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3'
miRNA:   3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 46590 0.79 0.646801
Target:  5'- cGCGUGCGGAGGCUCUGUcccugcggggcgAGGaCGGCu -3'
miRNA:   3'- cCGCGUGCUUCUGAGAUA------------UUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 126271 0.84 0.398383
Target:  5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3'
miRNA:   3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 16767 0.66 0.998784
Target:  5'- -cCGCGCGggGGCgcgCUGUucGGGcCGGa -3'
miRNA:   3'- ccGCGUGCuuCUGa--GAUA--UUCaGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.