Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24737 | 5' | -49.7 | NC_005264.1 | + | 58768 | 0.68 | 0.99018 |
Target: 5'- aGGCGCACGc--GCggu---GGUCGGCg -3' miRNA: 3'- -CCGCGUGCuucUGagauauUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 162427 | 0.68 | 0.99018 |
Target: 5'- aGGgGCGCGAAGccuacguCUCUGguAGUCcGCa -3' miRNA: 3'- -CCgCGUGCUUCu------GAGAUauUCAGcCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 159677 | 0.68 | 0.99018 |
Target: 5'- cGCGCGCGGAGGgUCgccguuUCGGUu -3' miRNA: 3'- cCGCGUGCUUCUgAGauauucAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 162663 | 0.68 | 0.992525 |
Target: 5'- aGCGCGcCGgcGGgUCguagGUGuacGGUCGGCg -3' miRNA: 3'- cCGCGU-GCuuCUgAGa---UAU---UCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 63014 | 0.68 | 0.993518 |
Target: 5'- uGGCGCACuccAGcCUUaccccgGGGUCGGCg -3' miRNA: 3'- -CCGCGUGcu-UCuGAGaua---UUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 88817 | 0.68 | 0.993518 |
Target: 5'- gGGCGUGCaGAGAUUCUcuc--UCGGCg -3' miRNA: 3'- -CCGCGUGcUUCUGAGAuauucAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 4328 | 0.69 | 0.983793 |
Target: 5'- aGGUGCGCGAaaGGuaGCUUaucgcgAUAgauAGUCGGCg -3' miRNA: 3'- -CCGCGUGCU--UC--UGAGa-----UAU---UCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 24550 | 0.7 | 0.980502 |
Target: 5'- uGCGCcCGGAGACUCUuUugccguucgucucuaGAGacUCGGCg -3' miRNA: 3'- cCGCGuGCUUCUGAGAuA---------------UUC--AGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 137498 | 0.7 | 0.979606 |
Target: 5'- cGCGUucAUGAAGuCUCUGgGGGcCGGCa -3' miRNA: 3'- cCGCG--UGCUUCuGAGAUaUUCaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 126271 | 0.84 | 0.398383 |
Target: 5'- -cCGCGCGAGGACUUggcggAGGUCGGCg -3' miRNA: 3'- ccGCGUGCUUCUGAGaua--UUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 46590 | 0.79 | 0.646801 |
Target: 5'- cGCGUGCGGAGGCUCUGUcccugcggggcgAGGaCGGCu -3' miRNA: 3'- cCGCGUGCUUCUGAGAUA------------UUCaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 152834 | 0.76 | 0.783106 |
Target: 5'- cGGCGCGggcuacggggcucguCGAGGGCUCguUGGGcUCGGCa -3' miRNA: 3'- -CCGCGU---------------GCUUCUGAGauAUUC-AGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 21254 | 0.75 | 0.85051 |
Target: 5'- gGGCGCACGAGcuGAC-C-AUAGG-CGGCa -3' miRNA: 3'- -CCGCGUGCUU--CUGaGaUAUUCaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 56827 | 0.75 | 0.85051 |
Target: 5'- cGGCGCAUGAuca-UCguuUGAGUCGGUa -3' miRNA: 3'- -CCGCGUGCUucugAGau-AUUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 51654 | 0.73 | 0.902023 |
Target: 5'- uGGUGCAUGAAGGCcaauUCga-GAGcCGGCa -3' miRNA: 3'- -CCGCGUGCUUCUG----AGauaUUCaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 116980 | 0.73 | 0.920478 |
Target: 5'- uGGCgGCGCGcAGACUCg--AAGUCuugggGGCg -3' miRNA: 3'- -CCG-CGUGCuUCUGAGauaUUCAG-----CCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 9608 | 0.71 | 0.954704 |
Target: 5'- uGCGC-CGAAGGCUCcGUAAcgUGGCu -3' miRNA: 3'- cCGCGuGCUUCUGAGaUAUUcaGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 3828 | 0.7 | 0.97189 |
Target: 5'- uGCGCGCGGAGAC-CUgcuccuggcAUGGGUCcuGCg -3' miRNA: 3'- cCGCGUGCUUCUGaGA---------UAUUCAGc-CG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 153353 | 0.7 | 0.974664 |
Target: 5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3' miRNA: 3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5' |
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24737 | 5' | -49.7 | NC_005264.1 | + | 24084 | 0.7 | 0.979606 |
Target: 5'- aGGCGCAUGAAG--UCUAUAGGUaguucGCc -3' miRNA: 3'- -CCGCGUGCUUCugAGAUAUUCAgc---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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