miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 45109 0.67 0.997019
Target:  5'- uGCGCgACGGAcuuCUCUGUGc-UCGGCa -3'
miRNA:   3'- cCGCG-UGCUUcu-GAGAUAUucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 20856 0.67 0.997019
Target:  5'- cGGCGCugcGCGAcuaaaaggagaaAGACUCUGgucuuGGUCGu- -3'
miRNA:   3'- -CCGCG---UGCU------------UCUGAGAUau---UCAGCcg -5'
24737 5' -49.7 NC_005264.1 + 160268 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 41241 0.67 0.997019
Target:  5'- cGCGgGCgGAGGACUCUG-AAGacUCGGa -3'
miRNA:   3'- cCGCgUG-CUUCUGAGAUaUUC--AGCCg -5'
24737 5' -49.7 NC_005264.1 + 149854 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 30828 0.67 0.996918
Target:  5'- cGUGCuCGAacGGGCUCgcgucgucGUCGGCg -3'
miRNA:   3'- cCGCGuGCU--UCUGAGauauu---CAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 108802 0.67 0.996486
Target:  5'- uGCGCACGucGGCaagauauguggUCUucAAGUCGcGCa -3'
miRNA:   3'- cCGCGUGCuuCUG-----------AGAuaUUCAGC-CG- -5'
24737 5' -49.7 NC_005264.1 + 29626 0.67 0.996486
Target:  5'- cGGCGCACGggGuaaag--AGGUCguccaGGCa -3'
miRNA:   3'- -CCGCGUGCuuCugagauaUUCAG-----CCG- -5'
24737 5' -49.7 NC_005264.1 + 43638 0.67 0.996486
Target:  5'- cGCGCcgGCGAGGuCguagGUGuacGGUCGGCg -3'
miRNA:   3'- cCGCG--UGCUUCuGaga-UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 142257 0.67 0.996486
Target:  5'- aGGCGC-CGAAGuuaUCgcgaGGGUCGGa -3'
miRNA:   3'- -CCGCGuGCUUCug-AGaua-UUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 119022 0.67 0.996253
Target:  5'- uGGC-UACGGAGAUUCUGUucugcugacgCGGCu -3'
miRNA:   3'- -CCGcGUGCUUCUGAGAUAuuca------GCCG- -5'
24737 5' -49.7 NC_005264.1 + 55178 0.67 0.995878
Target:  5'- gGGCGCGgcUGAAGGCggcgaccgCgaaacGUCGGCg -3'
miRNA:   3'- -CCGCGU--GCUUCUGa-------GauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 82945 0.67 0.995878
Target:  5'- cGCGCACGcaAAGACcaggccUGAGcCGGCg -3'
miRNA:   3'- cCGCGUGC--UUCUGagau--AUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 159860 0.67 0.995878
Target:  5'- cGGCGCuCGcauGGAUUCgu--GGUCGGa -3'
miRNA:   3'- -CCGCGuGCu--UCUGAGauauUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 131681 0.67 0.995878
Target:  5'- uGGCgGCACGucGGCUCgcaagcGUAGcGUgGGCc -3'
miRNA:   3'- -CCG-CGUGCuuCUGAGa-----UAUU-CAgCCG- -5'
24737 5' -49.7 NC_005264.1 + 43759 0.67 0.995473
Target:  5'- aGCGUgggggagaacaguuuACGGAGACUCgccGUGGGUgCGGg -3'
miRNA:   3'- cCGCG---------------UGCUUCUGAGa--UAUUCA-GCCg -5'
24737 5' -49.7 NC_005264.1 + 162785 0.67 0.995473
Target:  5'- aGCGUgggggagaacaguuuACGGAGACUCgccGUGGGUgCGGg -3'
miRNA:   3'- cCGCG---------------UGCUUCUGAGa--UAUUCA-GCCg -5'
24737 5' -49.7 NC_005264.1 + 5414 0.67 0.995186
Target:  5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3'
miRNA:   3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 124441 0.67 0.995186
Target:  5'- gGGCGUACGc-GGCaUCUGUc--UCGGCg -3'
miRNA:   3'- -CCGCGUGCuuCUG-AGAUAuucAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 28684 0.67 0.995186
Target:  5'- uGGCGCGcCGAgcuacAGAUUCUGUuGGgcgUGGUc -3'
miRNA:   3'- -CCGCGU-GCU-----UCUGAGAUAuUCa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.