miRNA display CGI


Results 41 - 55 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24738 5' -55.6 NC_005264.1 + 125045 0.68 0.861861
Target:  5'- cGGCGCGCCUCuUCUccgccgCUCGccucGAGuCCu -3'
miRNA:   3'- -UCGCGCGGAGcAGAaa----GAGC----CUCuGG- -5'
24738 5' -55.6 NC_005264.1 + 134040 0.66 0.920884
Target:  5'- aGGCGC-CCUUGUUUUUUaguaGGcAGGCCa -3'
miRNA:   3'- -UCGCGcGGAGCAGAAAGag--CC-UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 136956 0.71 0.70932
Target:  5'- cAGCGCcccacugugcggaGUCUgcaGUCUUUCUUGGAGGCg -3'
miRNA:   3'- -UCGCG-------------CGGAg--CAGAAAGAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 138444 0.69 0.804491
Target:  5'- cGCGCGCUUa--CUUggacgaccuaCUCGGGGACCa -3'
miRNA:   3'- uCGCGCGGAgcaGAAa---------GAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 139150 0.67 0.903238
Target:  5'- cGCGUGCCUCGgaacUCaUCaGGAGAgCa -3'
miRNA:   3'- uCGCGCGGAGCagaaAG-AG-CCUCUgG- -5'
24738 5' -55.6 NC_005264.1 + 144096 1.13 0.002125
Target:  5'- gAGCGCGCCUCGUCUUUCUCGGAGACCa -3'
miRNA:   3'- -UCGCGCGGAGCAGAAAGAGCCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 144909 0.68 0.879352
Target:  5'- cGCGaGCCUgGUCUUUCUaagcgugauucuagGGGGGCUg -3'
miRNA:   3'- uCGCgCGGAgCAGAAAGAg-------------CCUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 146080 0.68 0.854224
Target:  5'- cAGCGCGCCcccgCG-CgggUCUUGGuGGACUa -3'
miRNA:   3'- -UCGCGCGGa---GCaGaa-AGAGCC-UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 149401 0.73 0.609554
Target:  5'- cGGCGcCGCCgCGUCgcgUCUCGGcGGCg -3'
miRNA:   3'- -UCGC-GCGGaGCAGaa-AGAGCCuCUGg -5'
24738 5' -55.6 NC_005264.1 + 149435 0.69 0.818362
Target:  5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3'
miRNA:   3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5'
24738 5' -55.6 NC_005264.1 + 149575 0.68 0.846388
Target:  5'- uGGCGCGaacCCUCGUCguccUCcgagUCGGuagaGGACCa -3'
miRNA:   3'- -UCGCGC---GGAGCAGaa--AG----AGCC----UCUGG- -5'
24738 5' -55.6 NC_005264.1 + 149887 0.67 0.911733
Target:  5'- cGGCGCGCCgCccgguaggcaacggcGUCUcgaUCGGGGACg -3'
miRNA:   3'- -UCGCGCGGaG---------------CAGAaagAGCCUCUGg -5'
24738 5' -55.6 NC_005264.1 + 150438 0.66 0.936425
Target:  5'- gGGC-CGCCUCGgggcgggagaUCUUauagCUCGacGGGACCg -3'
miRNA:   3'- -UCGcGCGGAGC----------AGAAa---GAGC--CUCUGG- -5'
24738 5' -55.6 NC_005264.1 + 150887 0.71 0.739655
Target:  5'- gGGCGCGaCCUCGUCaggcaaguggacUUUCaccccagCGGcGACCg -3'
miRNA:   3'- -UCGCGC-GGAGCAG------------AAAGa------GCCuCUGG- -5'
24738 5' -55.6 NC_005264.1 + 160240 0.66 0.920884
Target:  5'- cGGCucGCGCCU--UCUccUUUGGAGACCu -3'
miRNA:   3'- -UCG--CGCGGAgcAGAaaGAGCCUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.