Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24738 | 5' | -55.6 | NC_005264.1 | + | 61484 | 0.67 | 0.903238 |
Target: 5'- uAGCGCGCCgacgCGccccgCggUCUCGGcuAGcGCCg -3' miRNA: 3'- -UCGCGCGGa---GCa----GaaAGAGCC--UC-UGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 139150 | 0.67 | 0.903238 |
Target: 5'- cGCGUGCCUCGgaacUCaUCaGGAGAgCa -3' miRNA: 3'- uCGCGCGGAGCagaaAG-AG-CCUCUgG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 26315 | 0.67 | 0.903238 |
Target: 5'- cGUcCGCgUCGUCUccggUCUCGGAccuagcuauGACCu -3' miRNA: 3'- uCGcGCGgAGCAGAa---AGAGCCU---------CUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 88817 | 0.67 | 0.896895 |
Target: 5'- gGGCGUGCagaGauUCUcUCUCGGcGACCg -3' miRNA: 3'- -UCGCGCGgagC--AGAaAGAGCCuCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 113951 | 0.67 | 0.896895 |
Target: 5'- cGCGUGCCg---CUUUCUCGGAcgugaaGGCa -3' miRNA: 3'- uCGCGCGGagcaGAAAGAGCCU------CUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 59731 | 0.67 | 0.894947 |
Target: 5'- cGCGCcggacguauuggcuGCCUCGaacUUCUCGGGGGgCa -3' miRNA: 3'- uCGCG--------------CGGAGCagaAAGAGCCUCUgG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 55336 | 0.67 | 0.890325 |
Target: 5'- cGUGCGCgUUGUCgcUCgCGGcGGCCu -3' miRNA: 3'- uCGCGCGgAGCAGaaAGaGCCuCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 83140 | 0.67 | 0.883533 |
Target: 5'- aGGCGCGUCUgcccucauggUGUCUgUCgCGGGGAUg -3' miRNA: 3'- -UCGCGCGGA----------GCAGAaAGaGCCUCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 144909 | 0.68 | 0.879352 |
Target: 5'- cGCGaGCCUgGUCUUUCUaagcgugauucuagGGGGGCUg -3' miRNA: 3'- uCGCgCGGAgCAGAAAGAg-------------CCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 125045 | 0.68 | 0.861861 |
Target: 5'- cGGCGCGCCUCuUCUccgccgCUCGccucGAGuCCu -3' miRNA: 3'- -UCGCGCGGAGcAGAaa----GAGC----CUCuGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 146080 | 0.68 | 0.854224 |
Target: 5'- cAGCGCGCCcccgCG-CgggUCUUGGuGGACUa -3' miRNA: 3'- -UCGCGCGGa---GCaGaa-AGAGCC-UCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 3240 | 0.68 | 0.846388 |
Target: 5'- cGGUGCGCauguccgucgCUCGUCUcgcUUCUCGGuggguGGGCa -3' miRNA: 3'- -UCGCGCG----------GAGCAGA---AAGAGCC-----UCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 75719 | 0.68 | 0.846388 |
Target: 5'- uGGUGCGCCcCG-CgggcgC-CGGAGGCCa -3' miRNA: 3'- -UCGCGCGGaGCaGaaa--GaGCCUCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 30548 | 0.68 | 0.846388 |
Target: 5'- uGGCGCGaacCCUCGUCguccUCcgagUCGGuagaGGACCa -3' miRNA: 3'- -UCGCGC---GGAGCAGaa--AG----AGCC----UCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 149575 | 0.68 | 0.846388 |
Target: 5'- uGGCGCGaacCCUCGUCguccUCcgagUCGGuagaGGACCa -3' miRNA: 3'- -UCGCGC---GGAGCAGaa--AG----AGCC----UCUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 123243 | 0.69 | 0.838362 |
Target: 5'- aAGCGCGCagcucCGUCUgg--CGGGGGCa -3' miRNA: 3'- -UCGCGCGga---GCAGAaagaGCCUCUGg -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 28320 | 0.69 | 0.830152 |
Target: 5'- cGCGCGCCUaCGUCUagUCgguaUCGGcacGACUu -3' miRNA: 3'- uCGCGCGGA-GCAGAa-AG----AGCCu--CUGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 38849 | 0.69 | 0.821765 |
Target: 5'- gAGCGUGCCUaCGUCg----CGGAGcuCCu -3' miRNA: 3'- -UCGCGCGGA-GCAGaaagaGCCUCu-GG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 149435 | 0.69 | 0.818362 |
Target: 5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3' miRNA: 3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5' |
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24738 | 5' | -55.6 | NC_005264.1 | + | 30408 | 0.69 | 0.818362 |
Target: 5'- cGCGCGCCggugCGgagagCUgcggcggaggaggUCUCGGGGgaGCCg -3' miRNA: 3'- uCGCGCGGa---GCa----GAa------------AGAGCCUC--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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