miRNA display CGI


Results 41 - 60 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 100821 0.67 0.991541
Target:  5'- uGCUAGagcGCgACAGGGACGA---CGGCGa -3'
miRNA:   3'- -UGAUU---CGgUGUCUUUGCUguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 101835 0.67 0.988951
Target:  5'- gGCcgAAGCCgagGCAGAGaacgaggccGCGAUAgUCGGCGc -3'
miRNA:   3'- -UGa-UUCGG---UGUCUU---------UGCUGU-AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 120630 0.67 0.990314
Target:  5'- uCUGGGCCAgGGAuACggGACGcCGGUGg -3'
miRNA:   3'- uGAUUCGGUgUCUuUG--CUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 8478 0.67 0.990314
Target:  5'- aGCUGGGUCcccaagcaGCAGAGugGGC--CGGCGc -3'
miRNA:   3'- -UGAUUCGG--------UGUCUUugCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5254 0.67 0.990314
Target:  5'- uGCUGGGCUACGGGGAagcgcccaagccCGGCcucgUGGCGu -3'
miRNA:   3'- -UGAUUCGGUGUCUUU------------GCUGua--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 117678 0.67 0.992642
Target:  5'- --aGAGCCAguGGugguguCGGCGUCGaGCGu -3'
miRNA:   3'- ugaUUCGGUguCUuu----GCUGUAGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 112671 0.67 0.992642
Target:  5'- ---cGGCCACGGAGuauuGCGGCAcgcccUCGuGCGc -3'
miRNA:   3'- ugauUCGGUGUCUU----UGCUGU-----AGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 79017 0.67 0.991541
Target:  5'- uGCUcGGCCGauaAGAAuGCGGCGUggaGGCGa -3'
miRNA:   3'- -UGAuUCGGUg--UCUU-UGCUGUAg--CCGC- -5'
24739 3' -50.5 NC_005264.1 + 133350 0.67 0.990314
Target:  5'- aACUaGAGaCCGCGGcccuccucGACGAC-UCGGCGa -3'
miRNA:   3'- -UGA-UUC-GGUGUCu-------UUGCUGuAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 1603 0.67 0.990314
Target:  5'- uCUGGGCCAgGGAuACggGACGcCGGUGg -3'
miRNA:   3'- uGAUUCGGUgUCUuUG--CUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 107625 0.67 0.990184
Target:  5'- cCUGGGCCGCGGGAGaaugagucugcgcCGACGUUucGCGg -3'
miRNA:   3'- uGAUUCGGUGUCUUU-------------GCUGUAGc-CGC- -5'
24739 3' -50.5 NC_005264.1 + 95343 0.67 0.988951
Target:  5'- ----cGCCGC-GAAACGGacUCGGCGg -3'
miRNA:   3'- ugauuCGGUGuCUUUGCUguAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 40960 0.67 0.988951
Target:  5'- ---cAGCCGCAGcGGGCGACGgcgCGaGCGc -3'
miRNA:   3'- ugauUCGGUGUC-UUUGCUGUa--GC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 30607 0.67 0.988951
Target:  5'- ---cAGCC-CGGcGACGGCggCGGCGa -3'
miRNA:   3'- ugauUCGGuGUCuUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5404 0.67 0.988951
Target:  5'- --gGGGCCAgCAGGGcguacGCGGCAucugucUCGGCGu -3'
miRNA:   3'- ugaUUCGGU-GUCUU-----UGCUGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 158976 0.67 0.987443
Target:  5'- --gGGGCCACG---GCGACcUCGGCu -3'
miRNA:   3'- ugaUUCGGUGUcuuUGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 124431 0.67 0.988951
Target:  5'- --gGGGCCAgCAGGGcguacGCGGCAucugucUCGGCGu -3'
miRNA:   3'- ugaUUCGGU-GUCUU-----UGCUGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37660 0.67 0.988951
Target:  5'- --aAGGCUuCGGuuGcCGGCAUCGGCGc -3'
miRNA:   3'- ugaUUCGGuGUCuuU-GCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 149634 0.67 0.988951
Target:  5'- ---cAGCC-CGGcGACGGCggCGGCGa -3'
miRNA:   3'- ugauUCGGuGUCuUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 159987 0.67 0.988951
Target:  5'- ---cAGCCGCAGcGGGCGACGgcgCGaGCGc -3'
miRNA:   3'- ugauUCGGUGUC-UUUGCUGUa--GC-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.