miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 117678 0.67 0.992642
Target:  5'- --aGAGCCAguGGugguguCGGCGUCGaGCGu -3'
miRNA:   3'- ugaUUCGGUguCUuu----GCUGUAGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 20209 0.67 0.988951
Target:  5'- ---uAGCCACAGAGguuCGGCA--GGCGa -3'
miRNA:   3'- ugauUCGGUGUCUUu--GCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 39949 0.67 0.987443
Target:  5'- --gGGGCCACG---GCGACcUCGGCu -3'
miRNA:   3'- ugaUUCGGUGUcuuUGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 38654 0.67 0.987443
Target:  5'- gACgAGGCCgGCAccGACGACGaCGGCGa -3'
miRNA:   3'- -UGaUUCGG-UGUcuUUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 64886 0.67 0.987443
Target:  5'- cGCaAGGCgGCGGAGAUGACcUCGacGCGa -3'
miRNA:   3'- -UGaUUCGgUGUCUUUGCUGuAGC--CGC- -5'
24739 3' -50.5 NC_005264.1 + 23637 0.68 0.97978
Target:  5'- gGCUuaGAGCCauaguACAGGAcCGGCAU-GGCGg -3'
miRNA:   3'- -UGA--UUCGG-----UGUCUUuGCUGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5986 0.68 0.977412
Target:  5'- gACUGGGCCAaGGGGA-GuCGUCGGCc -3'
miRNA:   3'- -UGAUUCGGUgUCUUUgCuGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 92875 0.68 0.97978
Target:  5'- cCUGAcGCCGCGGAAaaACaGCAUCaGCGa -3'
miRNA:   3'- uGAUU-CGGUGUCUU--UGcUGUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 103130 0.68 0.97978
Target:  5'- cGCgguAGCCGCcGgcGCGGCGcgCGGCGc -3'
miRNA:   3'- -UGau-UCGGUGuCuuUGCUGUa-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 34331 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 70991 0.68 0.981958
Target:  5'- cGCccGGUCGCAGggGCuGCGUgGGCa -3'
miRNA:   3'- -UGauUCGGUGUCuuUGcUGUAgCCGc -5'
24739 3' -50.5 NC_005264.1 + 79216 0.68 0.97978
Target:  5'- gGCUAGGCUGCGuGcAGGCGGCggCGGgGg -3'
miRNA:   3'- -UGAUUCGGUGU-C-UUUGCUGuaGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 30449 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 132872 0.68 0.977412
Target:  5'- ---cGGCCAgGGAcGCgGACAUUGGCa -3'
miRNA:   3'- ugauUCGGUgUCUuUG-CUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 83929 0.68 0.983764
Target:  5'- aGCauGGCCGCAGGGuCGAaagaagccauaacCGUCGGCa -3'
miRNA:   3'- -UGauUCGGUGUCUUuGCU-------------GUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 48616 0.68 0.981958
Target:  5'- cGCgUAGGCCGgGGAGGugggcaagcCGGCGUCGGUu -3'
miRNA:   3'- -UG-AUUCGGUgUCUUU---------GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 128451 0.68 0.981958
Target:  5'- aGCUcGAGCCGCGcccgucuuUGGCGUCGGCa -3'
miRNA:   3'- -UGA-UUCGGUGUcuuu----GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 50560 0.68 0.977164
Target:  5'- aGCUAGGCgCGCgcgugcgGGAAGCGcACG-CGGCGc -3'
miRNA:   3'- -UGAUUCG-GUG-------UCUUUGC-UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 13435 0.68 0.983956
Target:  5'- ----cGCCGCcgAGAcGCGACG-CGGCGg -3'
miRNA:   3'- ugauuCGGUG--UCUuUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 106291 0.68 0.985781
Target:  5'- aACUGgagaAGUCGgAG-AGCGACAgcugCGGCGg -3'
miRNA:   3'- -UGAU----UCGGUgUCuUUGCUGUa---GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.