miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 13435 0.68 0.983956
Target:  5'- ----cGCCGCcgAGAcGCGACG-CGGCGg -3'
miRNA:   3'- ugauuCGGUG--UCUuUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 94523 0.68 0.985781
Target:  5'- ---cGGCCACGuGGGAgGGCAgCGGCGc -3'
miRNA:   3'- ugauUCGGUGU-CUUUgCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 98408 0.68 0.985781
Target:  5'- --aGAGCCGCGGcAGACGuCAUCGcCGu -3'
miRNA:   3'- ugaUUCGGUGUC-UUUGCuGUAGCcGC- -5'
24739 3' -50.5 NC_005264.1 + 96636 0.68 0.985781
Target:  5'- cGCU-GGCCGCGGAGGCGcACcgCccgccgaugcgGGCGg -3'
miRNA:   3'- -UGAuUCGGUGUCUUUGC-UGuaG-----------CCGC- -5'
24739 3' -50.5 NC_005264.1 + 106291 0.68 0.985781
Target:  5'- aACUGgagaAGUCGgAG-AGCGACAgcugCGGCGg -3'
miRNA:   3'- -UGAU----UCGGUgUCuUUGCUGUa---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 34331 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 103130 0.68 0.97978
Target:  5'- cGCgguAGCCGCcGgcGCGGCGcgCGGCGc -3'
miRNA:   3'- -UGau-UCGGUGuCuuUGCUGUa-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 92875 0.68 0.97978
Target:  5'- cCUGAcGCCGCGGAAaaACaGCAUCaGCGa -3'
miRNA:   3'- uGAUU-CGGUGUCUU--UGcUGUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 57868 0.68 0.97978
Target:  5'- ----cGCCAgAGAcGGCGGCA-CGGCGg -3'
miRNA:   3'- ugauuCGGUgUCU-UUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 23637 0.68 0.97978
Target:  5'- gGCUuaGAGCCauaguACAGGAcCGGCAU-GGCGg -3'
miRNA:   3'- -UGA--UUCGG-----UGUCUUuGCUGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5986 0.68 0.977412
Target:  5'- gACUGGGCCAaGGGGA-GuCGUCGGCc -3'
miRNA:   3'- -UGAUUCGGUgUCUUUgCuGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 97006 0.68 0.985781
Target:  5'- uACUAaAGCUACGGAGcACGAagaggCGGCa -3'
miRNA:   3'- -UGAU-UCGGUGUCUU-UGCUgua--GCCGc -5'
24739 3' -50.5 NC_005264.1 + 136455 0.69 0.966209
Target:  5'- cGCUGAgGCCGCgcucAGAGACGGCGccgcgcagccugccgCGGCGc -3'
miRNA:   3'- -UGAUU-CGGUG----UCUUUGCUGUa--------------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 156599 0.69 0.965879
Target:  5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3'
miRNA:   3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37572 0.69 0.965879
Target:  5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3'
miRNA:   3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 101350 0.69 0.965879
Target:  5'- aGCcGAGaCCGC-GggGCG-CGUCGGCGc -3'
miRNA:   3'- -UGaUUC-GGUGuCuuUGCuGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 26155 0.69 0.969086
Target:  5'- --cAGGCCGCGGcGAggacuuucGCGGCAcugUCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC-UU--------UGCUGU---AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 71776 0.69 0.969086
Target:  5'- uGCUGGcGCCguuGCAGAAGCG-CcUCGGCu -3'
miRNA:   3'- -UGAUU-CGG---UGUCUUUGCuGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 104850 0.69 0.969086
Target:  5'- cGCUGAGCCACGGccGCcGCG-CGGgGa -3'
miRNA:   3'- -UGAUUCGGUGUCuuUGcUGUaGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 140841 0.69 0.972072
Target:  5'- --aAGGCCAaaaucaAGAGGCGACGacagcCGGCGg -3'
miRNA:   3'- ugaUUCGGUg-----UCUUUGCUGUa----GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.