Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24739 | 3' | -50.5 | NC_005264.1 | + | 88544 | 0.7 | 0.941675 |
Target: 5'- uACUGuggcGCCGCAGguACGAgAUcgCGGCGa -3' miRNA: 3'- -UGAUu---CGGUGUCuuUGCUgUA--GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 19268 | 0.7 | 0.946323 |
Target: 5'- --cGGGCCcCGGGGACGGCAgagUCGGgGg -3' miRNA: 3'- ugaUUCGGuGUCUUUGCUGU---AGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 140841 | 0.69 | 0.972072 |
Target: 5'- --aAGGCCAaaaucaAGAGGCGACGacagcCGGCGg -3' miRNA: 3'- ugaUUCGGUg-----UCUUUGCUGUa----GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 136455 | 0.69 | 0.966209 |
Target: 5'- cGCUGAgGCCGCgcucAGAGACGGCGccgcgcagccugccgCGGCGc -3' miRNA: 3'- -UGAUU-CGGUG----UCUUUGCUGUa--------------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 37572 | 0.69 | 0.965879 |
Target: 5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3' miRNA: 3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 101350 | 0.69 | 0.965879 |
Target: 5'- aGCcGAGaCCGC-GggGCG-CGUCGGCGc -3' miRNA: 3'- -UGaUUC-GGUGuCuuUGCuGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 156599 | 0.69 | 0.965879 |
Target: 5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3' miRNA: 3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 26155 | 0.69 | 0.969086 |
Target: 5'- --cAGGCCGCGGcGAggacuuucGCGGCAcugUCGGCGg -3' miRNA: 3'- ugaUUCGGUGUC-UU--------UGCUGU---AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 71776 | 0.69 | 0.969086 |
Target: 5'- uGCUGGcGCCguuGCAGAAGCG-CcUCGGCu -3' miRNA: 3'- -UGAUU-CGG---UGUCUUUGCuGuAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 104850 | 0.69 | 0.969086 |
Target: 5'- cGCUGAGCCACGGccGCcGCG-CGGgGa -3' miRNA: 3'- -UGAUUCGGUGUCuuUGcUGUaGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 5986 | 0.68 | 0.977412 |
Target: 5'- gACUGGGCCAaGGGGA-GuCGUCGGCc -3' miRNA: 3'- -UGAUUCGGUgUCUUUgCuGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 23637 | 0.68 | 0.97978 |
Target: 5'- gGCUuaGAGCCauaguACAGGAcCGGCAU-GGCGg -3' miRNA: 3'- -UGA--UUCGG-----UGUCUUuGCUGUAgCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 128451 | 0.68 | 0.981958 |
Target: 5'- aGCUcGAGCCGCGcccgucuuUGGCGUCGGCa -3' miRNA: 3'- -UGA-UUCGGUGUcuuu----GCUGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 48616 | 0.68 | 0.981958 |
Target: 5'- cGCgUAGGCCGgGGAGGugggcaagcCGGCGUCGGUu -3' miRNA: 3'- -UG-AUUCGGUgUCUUU---------GCUGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 30449 | 0.68 | 0.981958 |
Target: 5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3' miRNA: 3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 70991 | 0.68 | 0.981958 |
Target: 5'- cGCccGGUCGCAGggGCuGCGUgGGCa -3' miRNA: 3'- -UGauUCGGUGUCuuUGcUGUAgCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 34331 | 0.68 | 0.981958 |
Target: 5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3' miRNA: 3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 92875 | 0.68 | 0.97978 |
Target: 5'- cCUGAcGCCGCGGAAaaACaGCAUCaGCGa -3' miRNA: 3'- uGAUU-CGGUGUCUU--UGcUGUAGcCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 57868 | 0.68 | 0.97978 |
Target: 5'- ----cGCCAgAGAcGGCGGCA-CGGCGg -3' miRNA: 3'- ugauuCGGUgUCU-UUGCUGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 103130 | 0.68 | 0.97978 |
Target: 5'- cGCgguAGCCGCcGgcGCGGCGcgCGGCGc -3' miRNA: 3'- -UGau-UCGGUGuCuuUGCUGUa-GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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