miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 149476 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 153358 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 106291 0.68 0.985781
Target:  5'- aACUGgagaAGUCGgAG-AGCGACAgcugCGGCGg -3'
miRNA:   3'- -UGAU----UCGGUgUCuUUGCUGUa---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 98408 0.68 0.985781
Target:  5'- --aGAGCCGCGGcAGACGuCAUCGcCGu -3'
miRNA:   3'- ugaUUCGGUGUC-UUUGCuGUAGCcGC- -5'
24739 3' -50.5 NC_005264.1 + 103927 0.68 0.97978
Target:  5'- cCUAcGCCAUcgaGGAGGCGGCAUCcGCu -3'
miRNA:   3'- uGAUuCGGUG---UCUUUGCUGUAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 103130 0.68 0.97978
Target:  5'- cGCgguAGCCGCcGgcGCGGCGcgCGGCGc -3'
miRNA:   3'- -UGau-UCGGUGuCuuUGCUGUa-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 34331 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 57868 0.68 0.97978
Target:  5'- ----cGCCAgAGAcGGCGGCA-CGGCGg -3'
miRNA:   3'- ugauuCGGUgUCU-UUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 30449 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 48616 0.68 0.981958
Target:  5'- cGCgUAGGCCGgGGAGGugggcaagcCGGCGUCGGUu -3'
miRNA:   3'- -UG-AUUCGGUgUCUUU---------GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 128451 0.68 0.981958
Target:  5'- aGCUcGAGCCGCGcccgucuuUGGCGUCGGCa -3'
miRNA:   3'- -UGA-UUCGGUGUcuuu----GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 70991 0.68 0.981958
Target:  5'- cGCccGGUCGCAGggGCuGCGUgGGCa -3'
miRNA:   3'- -UGauUCGGUGUCuuUGcUGUAgCCGc -5'
24739 3' -50.5 NC_005264.1 + 67275 0.68 0.981958
Target:  5'- uAUUGAGUCGCGcuAGCG-CGUCGGCu -3'
miRNA:   3'- -UGAUUCGGUGUcuUUGCuGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 6222 0.68 0.981958
Target:  5'- --cGGGCCuACGGAGACGGguucugCGGCGg -3'
miRNA:   3'- ugaUUCGG-UGUCUUUGCUgua---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 13435 0.68 0.983956
Target:  5'- ----cGCCGCcgAGAcGCGACG-CGGCGg -3'
miRNA:   3'- ugauuCGGUG--UCUuUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 94523 0.68 0.985781
Target:  5'- ---cGGCCACGuGGGAgGGCAgCGGCGc -3'
miRNA:   3'- ugauUCGGUGU-CUUUgCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 92875 0.68 0.97978
Target:  5'- cCUGAcGCCGCGGAAaaACaGCAUCaGCGa -3'
miRNA:   3'- uGAUU-CGGUGUCUU--UGcUGUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 101835 0.67 0.988951
Target:  5'- gGCcgAAGCCgagGCAGAGaacgaggccGCGAUAgUCGGCGc -3'
miRNA:   3'- -UGa-UUCGG---UGUCUU---------UGCUGU-AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 40960 0.67 0.988951
Target:  5'- ---cAGCCGCAGcGGGCGACGgcgCGaGCGc -3'
miRNA:   3'- ugauUCGGUGUC-UUUGCUGUa--GC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 30607 0.67 0.988951
Target:  5'- ---cAGCC-CGGcGACGGCggCGGCGa -3'
miRNA:   3'- ugauUCGGuGUCuUUGCUGuaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.