miRNA display CGI


Results 101 - 120 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 5404 0.67 0.988951
Target:  5'- --gGGGCCAgCAGGGcguacGCGGCAucugucUCGGCGu -3'
miRNA:   3'- ugaUUCGGU-GUCUU-----UGCUGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 20209 0.67 0.988951
Target:  5'- ---uAGCCACAGAGguuCGGCA--GGCGa -3'
miRNA:   3'- ugauUCGGUGUCUUu--GCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 39949 0.67 0.987443
Target:  5'- --gGGGCCACG---GCGACcUCGGCu -3'
miRNA:   3'- ugaUUCGGUGUcuuUGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 38654 0.67 0.987443
Target:  5'- gACgAGGCCgGCAccGACGACGaCGGCGa -3'
miRNA:   3'- -UGaUUCGG-UGUcuUUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 79017 0.67 0.991541
Target:  5'- uGCUcGGCCGauaAGAAuGCGGCGUggaGGCGa -3'
miRNA:   3'- -UGAuUCGGUg--UCUU-UGCUGUAg--CCGC- -5'
24739 3' -50.5 NC_005264.1 + 112671 0.67 0.992642
Target:  5'- ---cGGCCACGGAGuauuGCGGCAcgcccUCGuGCGc -3'
miRNA:   3'- ugauUCGGUGUCUU----UGCUGU-----AGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 53096 0.66 0.995961
Target:  5'- uCUAAGCUGguGGAcaaGGCGcUCGGCGa -3'
miRNA:   3'- uGAUUCGGUguCUUug-CUGU-AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 9934 0.66 0.993626
Target:  5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3'
miRNA:   3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 110207 0.66 0.993626
Target:  5'- cCUAA-CgGCAGggGCGGCAcgGGCGg -3'
miRNA:   3'- uGAUUcGgUGUCuuUGCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 45543 0.66 0.993626
Target:  5'- ----cGCaCGCGGAGAgCGGCAUCGcGCa -3'
miRNA:   3'- ugauuCG-GUGUCUUU-GCUGUAGC-CGc -5'
24739 3' -50.5 NC_005264.1 + 56878 0.66 0.994502
Target:  5'- gGCUAGGCCACugucgaagaccgGGAAcuggGCGAgCAUUauggGGCGg -3'
miRNA:   3'- -UGAUUCGGUG------------UCUU----UGCU-GUAG----CCGC- -5'
24739 3' -50.5 NC_005264.1 + 40740 0.66 0.996562
Target:  5'- ----cGCgGCAGAGuucACGGCcUCGGCa -3'
miRNA:   3'- ugauuCGgUGUCUU---UGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 102102 0.66 0.994502
Target:  5'- --cGAGUCugAG-GACGGCuggCGGCGg -3'
miRNA:   3'- ugaUUCGGugUCuUUGCUGua-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 52168 0.66 0.994502
Target:  5'- cGCUcu-CUACuGGAAACGACggCGGCGa -3'
miRNA:   3'- -UGAuucGGUG-UCUUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 4262 0.66 0.995277
Target:  5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3'
miRNA:   3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 8005 0.66 0.995277
Target:  5'- uGCgGGGCCgGCAGAGGCGcccgccACGaCGGCGc -3'
miRNA:   3'- -UGaUUCGG-UGUCUUUGC------UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 8209 0.66 0.995277
Target:  5'- --gGGGaCACGGAGACGcggcCAUCGGCc -3'
miRNA:   3'- ugaUUCgGUGUCUUUGCu---GUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 162817 0.66 0.996562
Target:  5'- aGCUAgGGCCGCGGcguuAUGGCGUgcCGGUGc -3'
miRNA:   3'- -UGAU-UCGGUGUCuu--UGCUGUA--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 90650 0.66 0.995277
Target:  5'- --aGGGCgCGCGGAGACcGCAUugcUGGCGg -3'
miRNA:   3'- ugaUUCG-GUGUCUUUGcUGUA---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 2891 0.66 0.995961
Target:  5'- cGCggcGCgGCGGGGAgGGCGaCGGCGa -3'
miRNA:   3'- -UGauuCGgUGUCUUUgCUGUaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.