Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24739 | 3' | -50.5 | NC_005264.1 | + | 2468 | 0.7 | 0.958776 |
Target: 5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3' miRNA: 3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 121495 | 0.7 | 0.958776 |
Target: 5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3' miRNA: 3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 101350 | 0.69 | 0.965879 |
Target: 5'- aGCcGAGaCCGC-GggGCG-CGUCGGCGc -3' miRNA: 3'- -UGaUUC-GGUGuCuuUGCuGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 37572 | 0.69 | 0.965879 |
Target: 5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3' miRNA: 3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 156599 | 0.69 | 0.965879 |
Target: 5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3' miRNA: 3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 136455 | 0.69 | 0.966209 |
Target: 5'- cGCUGAgGCCGCgcucAGAGACGGCGccgcgcagccugccgCGGCGc -3' miRNA: 3'- -UGAUU-CGGUG----UCUUUGCUGUa--------------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 26155 | 0.69 | 0.969086 |
Target: 5'- --cAGGCCGCGGcGAggacuuucGCGGCAcugUCGGCGg -3' miRNA: 3'- ugaUUCGGUGUC-UU--------UGCUGU---AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 104850 | 0.69 | 0.969086 |
Target: 5'- cGCUGAGCCACGGccGCcGCG-CGGgGa -3' miRNA: 3'- -UGAUUCGGUGUCuuUGcUGUaGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 71776 | 0.69 | 0.969086 |
Target: 5'- uGCUGGcGCCguuGCAGAAGCG-CcUCGGCu -3' miRNA: 3'- -UGAUU-CGG---UGUCUUUGCuGuAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 140841 | 0.69 | 0.972072 |
Target: 5'- --aAGGCCAaaaucaAGAGGCGACGacagcCGGCGg -3' miRNA: 3'- ugaUUCGGUg-----UCUUUGCUGUa----GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 50560 | 0.68 | 0.977164 |
Target: 5'- aGCUAGGCgCGCgcgugcgGGAAGCGcACG-CGGCGc -3' miRNA: 3'- -UGAUUCG-GUG-------UCUUUGC-UGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 5986 | 0.68 | 0.977412 |
Target: 5'- gACUGGGCCAaGGGGA-GuCGUCGGCc -3' miRNA: 3'- -UGAUUCGGUgUCUUUgCuGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 132872 | 0.68 | 0.977412 |
Target: 5'- ---cGGCCAgGGAcGCgGACAUUGGCa -3' miRNA: 3'- ugauUCGGUgUCUuUG-CUGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 23637 | 0.68 | 0.97978 |
Target: 5'- gGCUuaGAGCCauaguACAGGAcCGGCAU-GGCGg -3' miRNA: 3'- -UGA--UUCGG-----UGUCUUuGCUGUAgCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 57868 | 0.68 | 0.97978 |
Target: 5'- ----cGCCAgAGAcGGCGGCA-CGGCGg -3' miRNA: 3'- ugauuCGGUgUCU-UUGCUGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 92875 | 0.68 | 0.97978 |
Target: 5'- cCUGAcGCCGCGGAAaaACaGCAUCaGCGa -3' miRNA: 3'- uGAUU-CGGUGUCUU--UGcUGUAGcCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 103130 | 0.68 | 0.97978 |
Target: 5'- cGCgguAGCCGCcGgcGCGGCGcgCGGCGc -3' miRNA: 3'- -UGau-UCGGUGuCuuUGCUGUa-GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 103927 | 0.68 | 0.97978 |
Target: 5'- cCUAcGCCAUcgaGGAGGCGGCAUCcGCu -3' miRNA: 3'- uGAUuCGGUG---UCUUUGCUGUAGcCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 79216 | 0.68 | 0.97978 |
Target: 5'- gGCUAGGCUGCGuGcAGGCGGCggCGGgGg -3' miRNA: 3'- -UGAUUCGGUGU-C-UUUGCUGuaGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 34331 | 0.68 | 0.981958 |
Target: 5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3' miRNA: 3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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