miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 65316 0.66 0.994502
Target:  5'- cGCUGccacGCCACAGccGCGGCAgcuccUGGCa -3'
miRNA:   3'- -UGAUu---CGGUGUCuuUGCUGUa----GCCGc -5'
24739 3' -50.5 NC_005264.1 + 67275 0.68 0.981958
Target:  5'- uAUUGAGUCGCGcuAGCG-CGUCGGCu -3'
miRNA:   3'- -UGAUUCGGUGUcuUUGCuGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 70991 0.68 0.981958
Target:  5'- cGCccGGUCGCAGggGCuGCGUgGGCa -3'
miRNA:   3'- -UGauUCGGUGUCuuUGcUGUAgCCGc -5'
24739 3' -50.5 NC_005264.1 + 71776 0.69 0.969086
Target:  5'- uGCUGGcGCCguuGCAGAAGCG-CcUCGGCu -3'
miRNA:   3'- -UGAUU-CGG---UGUCUUUGCuGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 77214 0.82 0.414104
Target:  5'- cAUUAgcGGCUGCAGcAACGGCAUCGGCGg -3'
miRNA:   3'- -UGAU--UCGGUGUCuUUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 77779 0.82 0.387591
Target:  5'- gACgcGGCCGCAGAGACGcACcgCGGCGc -3'
miRNA:   3'- -UGauUCGGUGUCUUUGC-UGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 79017 0.67 0.991541
Target:  5'- uGCUcGGCCGauaAGAAuGCGGCGUggaGGCGa -3'
miRNA:   3'- -UGAuUCGGUg--UCUU-UGCUGUAg--CCGC- -5'
24739 3' -50.5 NC_005264.1 + 79216 0.68 0.97978
Target:  5'- gGCUAGGCUGCGuGcAGGCGGCggCGGgGg -3'
miRNA:   3'- -UGAUUCGGUGU-C-UUUGCUGuaGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 79411 0.67 0.992642
Target:  5'- gGCgAGGCCGCGGcgGAACccaGCGUgGGCGg -3'
miRNA:   3'- -UGaUUCGGUGUC--UUUGc--UGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 79872 0.7 0.95072
Target:  5'- cCUucGUCACGGggGCG-CggCGGCGa -3'
miRNA:   3'- uGAuuCGGUGUCuuUGCuGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 81913 0.7 0.95487
Target:  5'- --cGAGCCAgCAG-AACGAUcgucgcguaGUCGGCGg -3'
miRNA:   3'- ugaUUCGGU-GUCuUUGCUG---------UAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 83130 0.7 0.95487
Target:  5'- --aAGGCCGCGGAGGCG-CGUCuGCc -3'
miRNA:   3'- ugaUUCGGUGUCUUUGCuGUAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 83929 0.68 0.983764
Target:  5'- aGCauGGCCGCAGGGuCGAaagaagccauaacCGUCGGCa -3'
miRNA:   3'- -UGauUCGGUGUCUUuGCU-------------GUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 84774 0.71 0.931618
Target:  5'- aGCgcgGAGCUAUAGAuacaGACGGCAcauucgccUCGGCa -3'
miRNA:   3'- -UGa--UUCGGUGUCU----UUGCUGU--------AGCCGc -5'
24739 3' -50.5 NC_005264.1 + 88544 0.7 0.941675
Target:  5'- uACUGuggcGCCGCAGguACGAgAUcgCGGCGa -3'
miRNA:   3'- -UGAUu---CGGUGUCuuUGCUgUA--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 90650 0.66 0.995277
Target:  5'- --aGGGCgCGCGGAGACcGCAUugcUGGCGg -3'
miRNA:   3'- ugaUUCG-GUGUCUUUGcUGUA---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 91898 0.68 0.983956
Target:  5'- ---uGGCCGCGGcagcGAugGGCGggcgCGGCGa -3'
miRNA:   3'- ugauUCGGUGUC----UUugCUGUa---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 92875 0.68 0.97978
Target:  5'- cCUGAcGCCGCGGAAaaACaGCAUCaGCGa -3'
miRNA:   3'- uGAUU-CGGUGUCUU--UGcUGUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 93061 0.75 0.768944
Target:  5'- gGCUGucuGCUGCGGGAGgGGCcgCGGCGa -3'
miRNA:   3'- -UGAUu--CGGUGUCUUUgCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 94523 0.68 0.985781
Target:  5'- ---cGGCCACGuGGGAgGGCAgCGGCGc -3'
miRNA:   3'- ugauUCGGUGU-CUUUgCUGUaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.