Results 101 - 120 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24739 | 3' | -50.5 | NC_005264.1 | + | 112544 | 0.66 | 0.993626 |
Target: 5'- aGCUucaccGGCCGCcGAAAUagGGCGUUGGUGa -3' miRNA: 3'- -UGAu----UCGGUGuCUUUG--CUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 112671 | 0.67 | 0.992642 |
Target: 5'- ---cGGCCACGGAGuauuGCGGCAcgcccUCGuGCGc -3' miRNA: 3'- ugauUCGGUGUCUU----UGCUGU-----AGC-CGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116401 | 0.74 | 0.815859 |
Target: 5'- --aAAGCCGCAGGc-CGACGUCGaGCGc -3' miRNA: 3'- ugaUUCGGUGUCUuuGCUGUAGC-CGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116437 | 0.79 | 0.550737 |
Target: 5'- gGCgucuGGCCGCGGggGCGACgAUCGGgGc -3' miRNA: 3'- -UGau--UCGGUGUCuuUGCUG-UAGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116549 | 0.78 | 0.613684 |
Target: 5'- --gGGGCUACGGAGGCGGCGucgaugcgcagcUCGGCGa -3' miRNA: 3'- ugaUUCGGUGUCUUUGCUGU------------AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 117678 | 0.67 | 0.992642 |
Target: 5'- --aGAGCCAguGGugguguCGGCGUCGaGCGu -3' miRNA: 3'- ugaUUCGGUguCUuu----GCUGUAGC-CGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 118047 | 0.72 | 0.888395 |
Target: 5'- ----uGCCGCGGcgaccGCGGCGUCGGCa -3' miRNA: 3'- ugauuCGGUGUCuu---UGCUGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 120630 | 0.67 | 0.990314 |
Target: 5'- uCUGGGCCAgGGAuACggGACGcCGGUGg -3' miRNA: 3'- uGAUUCGGUgUCUuUG--CUGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 121495 | 0.7 | 0.958776 |
Target: 5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3' miRNA: 3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 121917 | 0.66 | 0.995961 |
Target: 5'- cGCggcGCgGCGGGGAgGGCGaCGGCGa -3' miRNA: 3'- -UGauuCGgUGUCUUUgCUGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 123289 | 0.66 | 0.995277 |
Target: 5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3' miRNA: 3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 124298 | 0.72 | 0.881226 |
Target: 5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3' miRNA: 3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 124431 | 0.67 | 0.988951 |
Target: 5'- --gGGGCCAgCAGGGcguacGCGGCAucugucUCGGCGu -3' miRNA: 3'- ugaUUCGGU-GUCUU-----UGCUGU------AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126163 | 0.73 | 0.866181 |
Target: 5'- gACUGAGCCGacGAAACGugGUC-GCGg -3' miRNA: 3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126875 | 0.77 | 0.645463 |
Target: 5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3' miRNA: 3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126908 | 0.66 | 0.995961 |
Target: 5'- ----nGCCcCAGAuGCGGCGUCGGa- -3' miRNA: 3'- ugauuCGGuGUCUuUGCUGUAGCCgc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 127032 | 0.66 | 0.995277 |
Target: 5'- uGCgGGGCCgGCAGAGGCGcccgccACGaCGGCGc -3' miRNA: 3'- -UGaUUCGG-UGUCUUUGC------UGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 127236 | 0.66 | 0.995277 |
Target: 5'- --gGGGaCACGGAGACGcggcCAUCGGCc -3' miRNA: 3'- ugaUUCgGUGUCUUUGCu---GUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 128451 | 0.68 | 0.981958 |
Target: 5'- aGCUcGAGCCGCGcccgucuuUGGCGUCGGCa -3' miRNA: 3'- -UGA-UUCGGUGUcuuu----GCUGUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 128960 | 0.66 | 0.993626 |
Target: 5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3' miRNA: 3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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