miRNA display CGI


Results 41 - 60 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 112671 0.67 0.992642
Target:  5'- ---cGGCCACGGAGuauuGCGGCAcgcccUCGuGCGc -3'
miRNA:   3'- ugauUCGGUGUCUU----UGCUGU-----AGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 112544 0.66 0.993626
Target:  5'- aGCUucaccGGCCGCcGAAAUagGGCGUUGGUGa -3'
miRNA:   3'- -UGAu----UCGGUGuCUUUG--CUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 111775 0.74 0.824742
Target:  5'- gGCUAGGCgGCcuAGAGGCGACGUCGaCa -3'
miRNA:   3'- -UGAUUCGgUG--UCUUUGCUGUAGCcGc -5'
24739 3' -50.5 NC_005264.1 + 110207 0.66 0.993626
Target:  5'- cCUAA-CgGCAGggGCGGCAcgGGCGg -3'
miRNA:   3'- uGAUUcGgUGUCuuUGCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 109888 0.74 0.806796
Target:  5'- ----cGCCGCguAGAGGCGcuGCAUCGGCGa -3'
miRNA:   3'- ugauuCGGUG--UCUUUGC--UGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 109606 0.66 0.996562
Target:  5'- --cGGGgCACGGAaagcaAAUGGCGUgGGCGg -3'
miRNA:   3'- ugaUUCgGUGUCU-----UUGCUGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 107625 0.67 0.990184
Target:  5'- cCUGGGCCGCGGGAGaaugagucugcgcCGACGUUucGCGg -3'
miRNA:   3'- uGAUUCGGUGUCUUU-------------GCUGUAGc-CGC- -5'
24739 3' -50.5 NC_005264.1 + 106291 0.68 0.985781
Target:  5'- aACUGgagaAGUCGgAG-AGCGACAgcugCGGCGg -3'
miRNA:   3'- -UGAU----UCGGUgUCuUUGCUGUa---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 104850 0.69 0.969086
Target:  5'- cGCUGAGCCACGGccGCcGCG-CGGgGa -3'
miRNA:   3'- -UGAUUCGGUGUCuuUGcUGUaGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 104482 0.66 0.996562
Target:  5'- cGCgccGGCCccgcCAGAGuACGACAggGGCGa -3'
miRNA:   3'- -UGau-UCGGu---GUCUU-UGCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 103927 0.68 0.97978
Target:  5'- cCUAcGCCAUcgaGGAGGCGGCAUCcGCu -3'
miRNA:   3'- uGAUuCGGUG---UCUUUGCUGUAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 103708 0.76 0.729006
Target:  5'- --aGGGCCAguGGAGCGGCGgcgCGGCa -3'
miRNA:   3'- ugaUUCGGUguCUUUGCUGUa--GCCGc -5'
24739 3' -50.5 NC_005264.1 + 103130 0.68 0.97978
Target:  5'- cGCgguAGCCGCcGgcGCGGCGcgCGGCGc -3'
miRNA:   3'- -UGau-UCGGUGuCuuUGCUGUa-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 102102 0.66 0.994502
Target:  5'- --cGAGUCugAG-GACGGCuggCGGCGg -3'
miRNA:   3'- ugaUUCGGugUCuUUGCUGua-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 101835 0.67 0.988951
Target:  5'- gGCcgAAGCCgagGCAGAGaacgaggccGCGAUAgUCGGCGc -3'
miRNA:   3'- -UGa-UUCGG---UGUCUU---------UGCUGU-AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 101350 0.69 0.965879
Target:  5'- aGCcGAGaCCGC-GggGCG-CGUCGGCGc -3'
miRNA:   3'- -UGaUUC-GGUGuCuuUGCuGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 101113 0.72 0.881226
Target:  5'- uCUGGGCCACGGAGGCGACcuGUU-GCa -3'
miRNA:   3'- uGAUUCGGUGUCUUUGCUG--UAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 100821 0.67 0.991541
Target:  5'- uGCUAGagcGCgACAGGGACGA---CGGCGa -3'
miRNA:   3'- -UGAUU---CGgUGUCUUUGCUguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 98408 0.68 0.985781
Target:  5'- --aGAGCCGCGGcAGACGuCAUCGcCGu -3'
miRNA:   3'- ugaUUCGGUGUC-UUUGCuGUAGCcGC- -5'
24739 3' -50.5 NC_005264.1 + 97006 0.68 0.985781
Target:  5'- uACUAaAGCUACGGAGcACGAagaggCGGCa -3'
miRNA:   3'- -UGAU-UCGGUGUCUU-UGCUgua--GCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.