miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 67275 0.68 0.981958
Target:  5'- uAUUGAGUCGCGcuAGCG-CGUCGGCu -3'
miRNA:   3'- -UGAUUCGGUGUcuUUGCuGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 65316 0.66 0.994502
Target:  5'- cGCUGccacGCCACAGccGCGGCAgcuccUGGCa -3'
miRNA:   3'- -UGAUu---CGGUGUCuuUGCUGUa----GCCGc -5'
24739 3' -50.5 NC_005264.1 + 64886 0.67 0.987443
Target:  5'- cGCaAGGCgGCGGAGAUGACcUCGacGCGa -3'
miRNA:   3'- -UGaUUCGgUGUCUUUGCUGuAGC--CGC- -5'
24739 3' -50.5 NC_005264.1 + 58754 0.67 0.987443
Target:  5'- cGCUGcGCUAuCAGAGGCgcacgcgcgGugGUCGGCGc -3'
miRNA:   3'- -UGAUuCGGU-GUCUUUG---------CugUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 58399 0.7 0.958014
Target:  5'- cGCcguGGCCAUugcucguuCGACAUCGGCGg -3'
miRNA:   3'- -UGau-UCGGUGucuuu---GCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 57889 0.66 0.995961
Target:  5'- -aUGGGCCACgAGGcuCGGCGcUUGGCa -3'
miRNA:   3'- ugAUUCGGUG-UCUuuGCUGU-AGCCGc -5'
24739 3' -50.5 NC_005264.1 + 57868 0.68 0.97978
Target:  5'- ----cGCCAgAGAcGGCGGCA-CGGCGg -3'
miRNA:   3'- ugauuCGGUgUCU-UUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 56878 0.66 0.994502
Target:  5'- gGCUAGGCCACugucgaagaccgGGAAcuggGCGAgCAUUauggGGCGg -3'
miRNA:   3'- -UGAUUCGGUG------------UCUU----UGCU-GUAG----CCGC- -5'
24739 3' -50.5 NC_005264.1 + 55350 0.72 0.895323
Target:  5'- uGCUGuguauuuuGGCCAUAGccGGGCcGCGUCGGCGg -3'
miRNA:   3'- -UGAU--------UCGGUGUC--UUUGcUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 54890 0.67 0.990314
Target:  5'- cGCcAAGUCACucugGGuAAGCG-CGUCGGCGg -3'
miRNA:   3'- -UGaUUCGGUG----UC-UUUGCuGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 53096 0.66 0.995961
Target:  5'- uCUAAGCUGguGGAcaaGGCGcUCGGCGa -3'
miRNA:   3'- uGAUUCGGUguCUUug-CUGU-AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 52168 0.66 0.994502
Target:  5'- cGCUcu-CUACuGGAAACGACggCGGCGa -3'
miRNA:   3'- -UGAuucGGUG-UCUUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 50560 0.68 0.977164
Target:  5'- aGCUAGGCgCGCgcgugcgGGAAGCGcACG-CGGCGc -3'
miRNA:   3'- -UGAUUCG-GUG-------UCUUUGC-UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 49343 0.72 0.902003
Target:  5'- cGCUcGGCC-CGGAGgaacGCGGCAagaUCGGCGc -3'
miRNA:   3'- -UGAuUCGGuGUCUU----UGCUGU---AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 49265 0.67 0.990314
Target:  5'- aGCUAAacagcGUCGCGGAGACGGUGUUGGgGg -3'
miRNA:   3'- -UGAUU-----CGGUGUCUUUGCUGUAGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 48616 0.68 0.981958
Target:  5'- cGCgUAGGCCGgGGAGGugggcaagcCGGCGUCGGUu -3'
miRNA:   3'- -UG-AUUCGGUgUCUUU---------GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 47925 0.67 0.991541
Target:  5'- cGCgGAGCCuuaucgACGGAGaACGGC-UCGGCa -3'
miRNA:   3'- -UGaUUCGG------UGUCUU-UGCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 45543 0.66 0.993626
Target:  5'- ----cGCaCGCGGAGAgCGGCAUCGcGCa -3'
miRNA:   3'- ugauuCG-GUGUCUUU-GCUGUAGC-CGc -5'
24739 3' -50.5 NC_005264.1 + 40960 0.67 0.988951
Target:  5'- ---cAGCCGCAGcGGGCGACGgcgCGaGCGc -3'
miRNA:   3'- ugauUCGGUGUC-UUUGCUGUa--GC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 40740 0.66 0.996562
Target:  5'- ----cGCgGCAGAGuucACGGCcUCGGCa -3'
miRNA:   3'- ugauuCGgUGUCUU---UGCUGuAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.