miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 149476 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 37179 0.72 0.908435
Target:  5'- cGCUGGGCCGCAGA--CG-CAUuuuaCGGCGc -3'
miRNA:   3'- -UGAUUCGGUGUCUuuGCuGUA----GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 158406 0.81 0.432386
Target:  5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3'
miRNA:   3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 153358 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 77779 0.82 0.387591
Target:  5'- gACgcGGCCGCAGAGACGcACcgCGGCGc -3'
miRNA:   3'- -UGauUCGGUGUCUUUGC-UGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 127032 0.66 0.995277
Target:  5'- uGCgGGGCCgGCAGAGGCGcccgccACGaCGGCGc -3'
miRNA:   3'- -UGaUUCGG-UGUCUUUGC------UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 116437 0.79 0.550737
Target:  5'- gGCgucuGGCCGCGGggGCGACgAUCGGgGc -3'
miRNA:   3'- -UGau--UCGGUGUCuuUGCUG-UAGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 134088 0.66 0.994502
Target:  5'- uGCUGucAGgCugGGAGACGuACAaaguuuUCGGCGc -3'
miRNA:   3'- -UGAU--UCgGugUCUUUGC-UGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 128960 0.66 0.993626
Target:  5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3'
miRNA:   3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 8478 0.67 0.990314
Target:  5'- aGCUGGGUCcccaagcaGCAGAGugGGC--CGGCGc -3'
miRNA:   3'- -UGAUUCGG--------UGUCUUugCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 149634 0.67 0.988951
Target:  5'- ---cAGCC-CGGcGACGGCggCGGCGa -3'
miRNA:   3'- ugauUCGGuGUCuUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 64886 0.67 0.987443
Target:  5'- cGCaAGGCgGCGGAGAUGACcUCGacGCGa -3'
miRNA:   3'- -UGaUUCGgUGUCUUUGCUGuAGC--CGC- -5'
24739 3' -50.5 NC_005264.1 + 132462 0.68 0.983956
Target:  5'- ----cGCCGCcgAGAcGCGACG-CGGCGg -3'
miRNA:   3'- ugauuCGGUG--UCUuUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 103927 0.68 0.97978
Target:  5'- cCUAcGCCAUcgaGGAGGCGGCAUCcGCu -3'
miRNA:   3'- uGAUuCGGUG---UCUUUGCUGUAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 50560 0.68 0.977164
Target:  5'- aGCUAGGCgCGCgcgugcgGGAAGCGcACG-CGGCGc -3'
miRNA:   3'- -UGAUUCG-GUG-------UCUUUGC-UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 121495 0.7 0.958776
Target:  5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3'
miRNA:   3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 136518 0.7 0.95487
Target:  5'- aGCUAGGuCCGagacCGGAGACGACG-CGGaCGa -3'
miRNA:   3'- -UGAUUC-GGU----GUCUUUGCUGUaGCC-GC- -5'
24739 3' -50.5 NC_005264.1 + 118047 0.72 0.888395
Target:  5'- ----uGCCGCGGcgaccGCGGCGUCGGCa -3'
miRNA:   3'- ugauuCGGUGUCuu---UGCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 126163 0.73 0.866181
Target:  5'- gACUGAGCCGacGAAACGugGUC-GCGg -3'
miRNA:   3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5'
24739 3' -50.5 NC_005264.1 + 93061 0.75 0.768944
Target:  5'- gGCUGucuGCUGCGGGAGgGGCcgCGGCGa -3'
miRNA:   3'- -UGAUu--CGGUGUCUUUgCUGuaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.