miRNA display CGI


Results 101 - 120 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 83130 0.7 0.95487
Target:  5'- --aAGGCCGCGGAGGCG-CGUCuGCc -3'
miRNA:   3'- ugaUUCGGUGUCUUUGCuGUAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 81913 0.7 0.95487
Target:  5'- --cGAGCCAgCAG-AACGAUcgucgcguaGUCGGCGg -3'
miRNA:   3'- ugaUUCGGU-GUCuUUGCUG---------UAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 58399 0.7 0.958014
Target:  5'- cGCcguGGCCAUugcucguuCGACAUCGGCGg -3'
miRNA:   3'- -UGau-UCGGUGucuuu---GCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 2468 0.7 0.958776
Target:  5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3'
miRNA:   3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37572 0.69 0.965879
Target:  5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3'
miRNA:   3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 26155 0.69 0.969086
Target:  5'- --cAGGCCGCGGcGAggacuuucGCGGCAcugUCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC-UU--------UGCUGU---AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 70991 0.68 0.981958
Target:  5'- cGCccGGUCGCAGggGCuGCGUgGGCa -3'
miRNA:   3'- -UGauUCGGUGUCuuUGcUGUAgCCGc -5'
24739 3' -50.5 NC_005264.1 + 83929 0.68 0.983764
Target:  5'- aGCauGGCCGCAGGGuCGAaagaagccauaacCGUCGGCa -3'
miRNA:   3'- -UGauUCGGUGUCUUuGCU-------------GUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 96636 0.68 0.985781
Target:  5'- cGCU-GGCCGCGGAGGCGcACcgCccgccgaugcgGGCGg -3'
miRNA:   3'- -UGAuUCGGUGUCUUUGC-UGuaG-----------CCGC- -5'
24739 3' -50.5 NC_005264.1 + 98408 0.68 0.985781
Target:  5'- --aGAGCCGCGGcAGACGuCAUCGcCGu -3'
miRNA:   3'- ugaUUCGGUGUC-UUUGCuGUAGCcGC- -5'
24739 3' -50.5 NC_005264.1 + 94523 0.68 0.985781
Target:  5'- ---cGGCCACGuGGGAgGGCAgCGGCGc -3'
miRNA:   3'- ugauUCGGUGU-CUUUgCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 13435 0.68 0.983956
Target:  5'- ----cGCCGCcgAGAcGCGACG-CGGCGg -3'
miRNA:   3'- ugauuCGGUG--UCUuUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 128451 0.68 0.981958
Target:  5'- aGCUcGAGCCGCGcccgucuuUGGCGUCGGCa -3'
miRNA:   3'- -UGA-UUCGGUGUcuuu----GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 48616 0.68 0.981958
Target:  5'- cGCgUAGGCCGgGGAGGugggcaagcCGGCGUCGGUu -3'
miRNA:   3'- -UG-AUUCGGUgUCUUU---------GCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 30449 0.68 0.981958
Target:  5'- --gGAGCCGCGGGcccCGGC-UCGGCc -3'
miRNA:   3'- ugaUUCGGUGUCUuu-GCUGuAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 34331 0.68 0.981958
Target:  5'- gGCUGAcUCGCuGAcGCGAgGUCGGCa -3'
miRNA:   3'- -UGAUUcGGUGuCUuUGCUgUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 77214 0.82 0.414104
Target:  5'- cAUUAgcGGCUGCAGcAACGGCAUCGGCGg -3'
miRNA:   3'- -UGAU--UCGGUGUCuUUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 39379 0.81 0.432386
Target:  5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3'
miRNA:   3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 7849 0.77 0.645463
Target:  5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3'
miRNA:   3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 103708 0.76 0.729006
Target:  5'- --aGGGCCAguGGAGCGGCGgcgCGGCa -3'
miRNA:   3'- ugaUUCGGUguCUUUGCUGUa--GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.