Results 81 - 100 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24739 | 3' | -50.5 | NC_005264.1 | + | 136518 | 0.7 | 0.95487 |
Target: 5'- aGCUAGGuCCGagacCGGAGACGACG-CGGaCGa -3' miRNA: 3'- -UGAUUC-GGU----GUCUUUGCUGUaGCC-GC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 16990 | 0.7 | 0.958396 |
Target: 5'- aACUccGCCGguccaaacagacuCAGGGACGGCAaaggCGGCGa -3' miRNA: 3'- -UGAuuCGGU-------------GUCUUUGCUGUa---GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 146056 | 0.7 | 0.958776 |
Target: 5'- cACaguGGCCACAGAGACcGC--CGGCGa -3' miRNA: 3'- -UGau-UCGGUGUCUUUGcUGuaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 121495 | 0.7 | 0.958776 |
Target: 5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3' miRNA: 3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 156599 | 0.69 | 0.965879 |
Target: 5'- ----cGCgACGGAGGCGGCAagucucgCGGCGg -3' miRNA: 3'- ugauuCGgUGUCUUUGCUGUa------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 136455 | 0.69 | 0.966209 |
Target: 5'- cGCUGAgGCCGCgcucAGAGACGGCGccgcgcagccugccgCGGCGc -3' miRNA: 3'- -UGAUU-CGGUG----UCUUUGCUGUa--------------GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 140841 | 0.69 | 0.972072 |
Target: 5'- --aAGGCCAaaaucaAGAGGCGACGacagcCGGCGg -3' miRNA: 3'- ugaUUCGGUg-----UCUUUGCUGUa----GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 124298 | 0.72 | 0.881226 |
Target: 5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3' miRNA: 3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 101113 | 0.72 | 0.881226 |
Target: 5'- uCUGGGCCACGGAGGCGACcuGUU-GCa -3' miRNA: 3'- uGAUUCGGUGUCUUUGCUG--UAGcCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 77779 | 0.82 | 0.387591 |
Target: 5'- gACgcGGCCGCAGAGACGcACcgCGGCGc -3' miRNA: 3'- -UGauUCGGUGUCUUUGC-UGuaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 158406 | 0.81 | 0.432386 |
Target: 5'- --gAGGCCuCAGAcgauGACGACGUCGGCGa -3' miRNA: 3'- ugaUUCGGuGUCU----UUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 36436 | 0.81 | 0.470314 |
Target: 5'- uGC-AGGCCGCGGAGACGACuugccucuccUCGGCGa -3' miRNA: 3'- -UGaUUCGGUGUCUUUGCUGu---------AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116437 | 0.79 | 0.550737 |
Target: 5'- gGCgucuGGCCGCGGggGCGACgAUCGGgGc -3' miRNA: 3'- -UGau--UCGGUGUCuuUGCUG-UAGCCgC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 116549 | 0.78 | 0.613684 |
Target: 5'- --gGGGCUACGGAGGCGGCGucgaugcgcagcUCGGCGa -3' miRNA: 3'- ugaUUCGGUGUCUUUGCUGU------------AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126875 | 0.77 | 0.645463 |
Target: 5'- --cGAGCUACcgcuagauuguGGggGCGGCGUCGGCGc -3' miRNA: 3'- ugaUUCGGUG-----------UCuuUGCUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 93061 | 0.75 | 0.768944 |
Target: 5'- gGCUGucuGCUGCGGGAGgGGCcgCGGCGa -3' miRNA: 3'- -UGAUu--CGGUGUCUUUgCUGuaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 18965 | 0.75 | 0.778628 |
Target: 5'- -aUGGGCCGCGGAAACGAUcgCccgGGCa -3' miRNA: 3'- ugAUUCGGUGUCUUUGCUGuaG---CCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 13334 | 0.75 | 0.788171 |
Target: 5'- gGCUAAGCCgaaGGGAACGGCGcgaaUCGaGCGg -3' miRNA: 3'- -UGAUUCGGug-UCUUUGCUGU----AGC-CGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 109888 | 0.74 | 0.806796 |
Target: 5'- ----cGCCGCguAGAGGCGcuGCAUCGGCGa -3' miRNA: 3'- ugauuCGGUG--UCUUUGC--UGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 126163 | 0.73 | 0.866181 |
Target: 5'- gACUGAGCCGacGAAACGugGUC-GCGg -3' miRNA: 3'- -UGAUUCGGUguCUUUGCugUAGcCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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