miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 140781 0.66 0.995277
Target:  5'- --aAAGCCguaccACGGAGGgGACAgCGGCa -3'
miRNA:   3'- ugaUUCGG-----UGUCUUUgCUGUaGCCGc -5'
24739 3' -50.5 NC_005264.1 + 90650 0.66 0.995277
Target:  5'- --aGGGCgCGCGGAGACcGCAUugcUGGCGg -3'
miRNA:   3'- ugaUUCG-GUGUCUUUGcUGUA---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 4262 0.66 0.995277
Target:  5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3'
miRNA:   3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 8005 0.66 0.995277
Target:  5'- uGCgGGGCCgGCAGAGGCGcccgccACGaCGGCGc -3'
miRNA:   3'- -UGaUUCGG-UGUCUUUGC------UGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 157683 0.66 0.994502
Target:  5'- --cGGGCCgGCAccGACGACGaCGGCGa -3'
miRNA:   3'- ugaUUCGG-UGUcuUUGCUGUaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 134088 0.66 0.994502
Target:  5'- uGCUGucAGgCugGGAGACGuACAaaguuuUCGGCGc -3'
miRNA:   3'- -UGAU--UCgGugUCUUUGC-UGU------AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 52168 0.66 0.994502
Target:  5'- cGCUcu-CUACuGGAAACGACggCGGCGa -3'
miRNA:   3'- -UGAuucGGUG-UCUUUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 102102 0.66 0.994502
Target:  5'- --cGAGUCugAG-GACGGCuggCGGCGg -3'
miRNA:   3'- ugaUUCGGugUCuUUGCUGua-GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 56878 0.66 0.994502
Target:  5'- gGCUAGGCCACugucgaagaccgGGAAcuggGCGAgCAUUauggGGCGg -3'
miRNA:   3'- -UGAUUCGGUG------------UCUU----UGCU-GUAG----CCGC- -5'
24739 3' -50.5 NC_005264.1 + 65316 0.66 0.994502
Target:  5'- cGCUGccacGCCACAGccGCGGCAgcuccUGGCa -3'
miRNA:   3'- -UGAUu---CGGUGUCuuUGCUGUa----GCCGc -5'
24739 3' -50.5 NC_005264.1 + 45543 0.66 0.993626
Target:  5'- ----cGCaCGCGGAGAgCGGCAUCGcGCa -3'
miRNA:   3'- ugauuCG-GUGUCUUU-GCUGUAGC-CGc -5'
24739 3' -50.5 NC_005264.1 + 110207 0.66 0.993626
Target:  5'- cCUAA-CgGCAGggGCGGCAcgGGCGg -3'
miRNA:   3'- uGAUUcGgUGUCuuUGCUGUagCCGC- -5'
24739 3' -50.5 NC_005264.1 + 112544 0.66 0.993626
Target:  5'- aGCUucaccGGCCGCcGAAAUagGGCGUUGGUGa -3'
miRNA:   3'- -UGAu----UCGGUGuCUUUG--CUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 9934 0.66 0.993626
Target:  5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3'
miRNA:   3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 3980 0.66 0.993626
Target:  5'- uGCUGuuAGCCGCuu---CGGCggCGGCGg -3'
miRNA:   3'- -UGAU--UCGGUGucuuuGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 128960 0.66 0.993626
Target:  5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3'
miRNA:   3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 79411 0.67 0.992642
Target:  5'- gGCgAGGCCGCGGcgGAACccaGCGUgGGCGg -3'
miRNA:   3'- -UGaUUCGGUGUC--UUUGc--UGUAgCCGC- -5'
24739 3' -50.5 NC_005264.1 + 112671 0.67 0.992642
Target:  5'- ---cGGCCACGGAGuauuGCGGCAcgcccUCGuGCGc -3'
miRNA:   3'- ugauUCGGUGUCUU----UGCUGU-----AGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 117678 0.67 0.992642
Target:  5'- --aGAGCCAguGGugguguCGGCGUCGaGCGu -3'
miRNA:   3'- ugaUUCGGUguCUuu----GCUGUAGC-CGC- -5'
24739 3' -50.5 NC_005264.1 + 79017 0.67 0.991541
Target:  5'- uGCUcGGCCGauaAGAAuGCGGCGUggaGGCGa -3'
miRNA:   3'- -UGAuUCGGUg--UCUU-UGCUGUAg--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.